Abstract
In the SPICE project we are building a distributed catalogue of life, which will eventually be formed from up to 200 autonomous taxonomic databases. We are faced with a number of challenges, which include the scalability of the system; the accommodation of partial or missing data; queries which are potentially very expensive computationally, where it is difficult to determine which databases will contain data matching the queries, and the effective integration of heterogeneous databases at the knowledge level. In this paper we present the architecture on which SPICE is being built, and we explain how, within our SPICE architecture, we will be able to explore and develop new techniques to enhance access to the SPICE distributed database.
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References
ANSI/NISO. Information Retrieval: Application Service Definition and Protocol Specification, April 1995. http://lcweb.loc.gov/z3950/agency/document.html.
C. Baru et al. XML-based information mediation for digital libraries. In E. A. Fox and N. Rowe, editors, Proceedings of the Fourth ACM Conference on Digital Libraries, pages 214–215, N.Y., 1999. ACM Press.
F.A. Bisby. Botanical strategies for compiling a global plant checklist. In F.A. Bisby, G.F. Russell, and R.J. Pankhurst, editors, Designs for a Global Plant Species Information System, pages 145–157. Oxford University Press, Systematics Association, 1993. Special Volume No. 48.
F.A. Bisby. Putting Names to Things and Keeping Track: the Species 2000 Programme for a Coordinated Catalogue of Life. In P. Bridge, D.R. Morse, and P.R. Scott, editors, Information Technology, Plant Pathology and Biodiversity, pages 59–68. CAB International, Wallingford, 1997.
F.A. Bisby, J.L. Zarrucchi, B.D. Schrire, Y.R. Roskov, and R.J. White. Ildis world database of legumes (edition 4). International Legume Database and Information Service, Reading, U.K., 1999. Electronic Database available by subscription (LegumeDisc service), and on the Web (LegumeWeb service) at http://www.ildis.org.
S.M. Brandt and F.A. Bisby. Species 2000: From Planning and Prototypes to Full Implementation. Association of Systematics Collections Newsletter, 27:12–13, 1999.
J.-R. Gruser et al. Wrapper generation for WEB accessible data sources. In Proceedings of the 6th International Conference on Cooperative Information Systems, pages 14–23, New York, 1998.
J. Hammer et al. Template-based wrappers in the TSIMMIS system. In Proceedings of the ACM SIGMOD International Conference on Management of Data, pages 532–535, New York, 1997. ACM Press.
W. Litwin, L. Mark, and N. Roussopoulos. Interoperability of multiple autonomous databases. ACM Computing Surveys, 22(3):267–293, 1990.
L. Liu et al. An XML-based wrapper generator for web information extraction. In A. Delis, C. Faloutsos, and S. Ghandeharizadeh, editors, Proceedings of the ACM SIGMOD International Conference on Management of Data (SIGMod-99), pages 540–543, New York, 1999. ACM Press.
D.R. Maddison and W.P. Maddison. The Tree of Life: a multi-authored, distributed Internet project containing information about phylogeny and biodiversity. http://phylogeny.arizona.edu/tree/phylogeny.html.
I. Muslea, S. Minton, and C. Knoblock. A hierarchical approach to wrapper induction. In Oren Etzioni, Jörg P. Müller, and Jeürey M. Bradshaw, editors, Proceedings of the Third Annual Conference on Autonomous Agents (AGENTS-99), pages 190–197, New York, 1999. ACM Press.
A. Paepcke et al. Using distributed objects for digital library interoperability. IEEE Computer, 29(5):61–68, 1996.
M. T. Roth and P. M. Schwarz. Don’t scrap it, wrap it! A wrapper architecture for legacy data sources. In VLDB’97, Proceedings of 23rd International Conference on Very Large Data Bases, pages 266–275, 1997.
A. P. Sheth and J. A. Larson. Federated database systems for managing distributed, heterogeneous, and autonomous databases. ACM Computing Surveys, 22(3):183–236, 1990.
J. Shimura et al. Species 2000: a Java/CORBA Common Access System implemented by the Species 2000 initiative in Japan. In Proceedings of Objects in Bioinformatics’ 98, 1998. Poster presentation: abstract available at http://industry.ebi.ac.uk/~alan/oib98/Abstracts/shimura.html.
J. Siegel. OMG overview: CORBA and the OMA in enterprise computing. Communications of the ACM, 41(10):37–43, 1998.
S. Weibel et al. Dublin core metadata for resource discovery. http://www.ietf.org/rfc/rfc2413.txt, September 1998.
G. Wiederhold. Mediators in the Architecture of Future Information Systems. IEEE Computer, 25(3):38–49, 1992.
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Jones, A.C. et al. (2000). SPICE: A Flexible Architecture for Integrating Autonomous Databases to Comprise a Distributed Catalogue of Life. In: Ibrahim, M., Küng, J., Revell, N. (eds) Database and Expert Systems Applications. DEXA 2000. Lecture Notes in Computer Science, vol 1873. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-44469-6_92
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DOI: https://doi.org/10.1007/3-540-44469-6_92
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