Skip to main content
Log in

Natural phenological variation in aspen (Populus tremula): the SwAsp collection

  • Original Paper
  • Published:
Tree Genetics & Genomes Aims and scope Submit manuscript

Abstract

The genus Populus is currently the main model system for genetic, genomic, and physiological research in trees. Phenotypic variation in aspen (Populus tremula) populations growing in different environments across Sweden is expected to reflect genetic variation that is important for local adaptation. To analyze such natural phenotypic and genetic variation, the Swedish Aspen (SwAsp) Collection was established. Trees were taken from 12 different populations across Sweden, from 56° to 66° latitude north and planted in two common gardens in Ekebo (55.9°N) and Sävar (63.4°N). Data related to phenological and growth traits were collected during the second year of growth. Some traits like the date of bud set and leaf area duration showed strong clinal variation patterns with latitude in both field trials, but the date of bud flush did not change along a latitudinal cline. The phenological traits showed moderate within-populations heritabilities, although growth traits showed weaker clinal patterns and lower heritabilities than the phenological traits. This research forms the starting point for the development of the SwAsp collection, a resource facilitating analysis of the natural genetic variation in aspen, the elucidation of the structure and dynamics of aspen populations, and the future identification of the genes controlling adaptive traits using association mapping of selected candidate genes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

References

  • Alonso-Blanco C, Koornneef M (2000) Naturally ocurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends Plant Sci 5:22–29

    Article  CAS  PubMed  Google Scholar 

  • Andersson A, Keskitalo J, Sjödin A, Bhalerao RR, Sterky F, Wissel K, Tandre K, Aspeborg H, Moyle R, Ohmiya Y, Bhalerao RP, Brunner A, Gustafsson P, Karlsson J, Lundeberg J, Nilsson O, Sandberg G, Strauss S, Sundberg B, Uhlen M, Jansson S, Nilsson P (2004) A transcriptional timetable of autumn senescence. Genome Biol 5:R24

    Article  PubMed  Google Scholar 

  • Arora R, Rowland LJ, Tanio K (2003) Induction and release of bud dormancy in woody perennials: a science comes of age. HortScience 38:911–921

    Google Scholar 

  • Bhalerao RR, Keskitalo J, Sterky F, Erlandsson R, Björkbacka H, Birve S, Karlsson J, Gardeström P, Gustafsson P, Lundeberg J, Jansson S (2003) Gene expression in autumn leaves. Plant Physiol 131:430–442

    Article  PubMed  Google Scholar 

  • Böhlenius H, Huang T, Charbonnel-Campaa L, Brunner AM, Jansson S, Strauss SH, Nilsson O (2006) CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science 312:1040–1043

    Article  PubMed  CAS  Google Scholar 

  • Box GEP, Tiao GC (1973) Bayesian inference in statistical analysis. Addison-Wesley, Reading, UK

    Google Scholar 

  • Bradshaw HD, Stettler RF (1995) Molecular genetics of growth and development in Populus.IV. Mapping QTLs with large effects on growth, form and phenology traits in a forest tree. Genetics 139:963–973

    CAS  PubMed  Google Scholar 

  • Bradshaw HD, Ceulemans R, Davis J, Stettler R (2000) Emerging model systems in plant biology: poplar (Populus) as a model forest tree. J Plant Growth Regul 19:306–313

    Article  CAS  Google Scholar 

  • Brissette JC, Barnes BV (1984) Comparisons of phenology and growth of Michigan and western North American sources of Populus tremuloides. Can J Forest Res 14:789–793

    Article  Google Scholar 

  • Brunner AM, Busov VB, Strauss SH (2004) Poplar genome sequence: functional genomics in as ecologically dominant plant species. Trends Plant Sci 9:49–56

    Article  CAS  PubMed  Google Scholar 

  • Chen THH, Howe GT, Bradshaw HD Jr (2003) Molecular genetic analysis of dormancy related traits in poplars. Weed Sci 50:232–240

    Article  Google Scholar 

  • Cronk QCB (2005) Plant eco-devo: the potential of poplar as a model organism. New Phytol 166:39–48

    Article  CAS  PubMed  Google Scholar 

  • Dunlap JM, Stettler RF (1996) Genetic variation and productivity of Populus trichocarpa and its hybrids. IX. Phenology and Melampsora rust incidence of native black cottonwood clones from four river valleys in Washington. For Ecol Manag 87:233–256

    Article  Google Scholar 

  • Farmer RE (1993) Latitudinal variation in height and phenology of balsam poplar. Silvae Genet 42:148–153

    Google Scholar 

  • Frewen BE, Chen THH, Howe GT, Davis J, Rohde A, Boerjan W, Bradshaw HD (2000) Quantitative trait loci and candidate gene mapping of bud set and bud flush in Populus. Genetics 154:837–845

    CAS  PubMed  Google Scholar 

  • Gelman AJ, Carlin JB, Stern HS, Rubin D (1995) Bayesian data analysis. Chapman & Hall, London

    Google Scholar 

  • Gilchrist EJ, Haughn GW, Ying CC, Otto S, Zhuang J, Cheung D, Hamberger B, Aboutorabi F, Kalynyak T, Johnson L, Bohlmann J, Ellis BS, Douglas CJ, Cronk QCB (2006) Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa. Mol Ecol 15:1367–1378

    Article  CAS  PubMed  Google Scholar 

  • Håbjørg A (1972) Effects of photoperiod and temperature on growth and development of three latitudinal and three altitudinal populations of Betula pubescens Ehrh. Institute of Dendrology and Nursery Management, Agricultural University of Norway, Report No 44, 51:1–27

  • Howe GT, Hackett WP, Furnier GR, Klevorn RE (1995) Photoperiodic responses of a northern and southern ecotype of black cottonwood. Physiol Plant 93:695–708

    Article  CAS  Google Scholar 

  • Howe GT, Gardner G, Hackett WP, Furnier GR (1996) Phytochrome control of short-day induced bud set in black cottonwood. Physiol Plant 97:95–103

    Article  CAS  Google Scholar 

  • Howe GT, Saruul P, Davis J, Chen THH (2000) Quantitative genetics of bud phenology, frost damage, and winter survival in a F2 family of hybrid poplars. Theor Appl Genet 101:632–642

    Article  Google Scholar 

  • Hultén E, Fries M (1986) Atlas of North European vascular plants: north of the tropic of cancer I–III. Koeltz Scientifics Books, Königstein

    Google Scholar 

  • Ingvarsson PK (2005) Nucleotide polymorphisms and linkage disequilibrium within and among natural populations of European aspen (Populus tremula L, Salicaceae). Genetics 169:945–953

    Article  CAS  PubMed  Google Scholar 

  • Ingvarsson PK, Garcia MV, Hall D, Luquez V, Jansson S (2006) Clinal variation in phyB2, a candidate gene for day-length induced growth cessation and bud set, across a latitudinal gradient in European aspen (Populus tremula). Genetics 172:1845–1853

    Article  CAS  PubMed  Google Scholar 

  • Jackson JE (2003) A user’s guide to principal components. Wiley, Hoboken, NJ

    Google Scholar 

  • Jalas J, Suominen J (1989). Atlas florae europaeae: distribution of vascular plants in Europe, vol 3. Cambridge University Press, Cambridge

    Google Scholar 

  • Koornneef M, Alonso-Blanco C, Vreugdenhil D (2004) Natural occurring genetic variation in Arabidopsis thaliana. Ann Rev Plant Biol 55:141–172

    Article  CAS  Google Scholar 

  • Koski V, Sievänen R (1985) Timing of growth cessation in relation to the variations in the growing season. In: Tigersted P, Puttonen P, Smolander H (eds) Crop physiology of forest trees. Helsinki University Press, Helsinki, pp 167–193

    Google Scholar 

  • Lynch M, Walsh B (1998) Genetics and analysis of quantitative traits. Sinauer, Sunderland, MA

    Google Scholar 

  • Neale DB, Savolainen O (2004) Association genetics of complex traits in conifers. Trends Plant Sci 9:325–330

    Article  CAS  PubMed  Google Scholar 

  • Olsen JE, Junttila O, Nilsen J, Erickson ME, Martinussen I, Olsson O, Sandberg G, Moritz T (1997) Ectopic expression of oat phytochrome A in hybrid aspen changes critical daylength for growth and prevents cold acclimatization. Plant J 12:1339–1350

    Article  CAS  Google Scholar 

  • Pauley SS, Perry TO (1954) Ecotypic variation of the photoperiodic response in Populus. J Arnold Arbor 35:167–188

    Google Scholar 

  • Pinheiro JC, Bates DM (2000) Mixed-effects models in S and S-PLUS. Springer, Berlin Heidelberg New York

    Google Scholar 

  • Pryor LD, Willing RR (1965) The development of poplar clones suited to low latitudes. Silvae Genet 14:123–127

    Google Scholar 

  • Rafalski A (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5:94–100

    Article  CAS  PubMed  Google Scholar 

  • Riemenschneider DE, McMahon BG, Ostry ME (1992) Use of selection indices to increase tree height and to control damaging agents in 2-year-old balsam poplar. Can J For Res 22:561–567

    Article  Google Scholar 

  • Riemenschneider DE, Mc Mahon BG, Ostry ME (1994) Population-dependent selection strategies needed for 2-year-old black cottonwood clones. Can J For Res 24:1704–1710

    Google Scholar 

  • Searle SR (1961) Phenotypic, genetic and environmental correlations. Biometrics 17:474–480

    Article  Google Scholar 

  • Sterky F, Bhalerao RR, Unneberg P, Segerman B, Nilsson P, Brunner A, Charbonnel-Campaa L, Jonsson-Lindvall J, Tandre K, Strauss SH, Sundberg B, Gustafsson P, Uhlén M, Bhalerao RP, Nilsson O, Sandberg G, Karlsson J, Lundeberg J, Jansson S (2004) A Populus EST database for plant functional genomics. Proc Natl Acad Sci USA 101:13951–13956

    Article  PubMed  Google Scholar 

  • Taylor G (2002) Populus: Arabidopsis for Forestry. Do we need a model tree? Ann Bot 90:681–689

    Article  CAS  PubMed  Google Scholar 

  • Tuskan GA et al (2006) The Genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596–1604

    Article  CAS  PubMed  Google Scholar 

  • Weber JC, Stettler RF, Heilman PE (1985) Genetic variation and productivity of Populus trichocarpa and its hybrids. I. Morphology and phenology of 50 native clones. Can J For Res 15:376–383

    Article  Google Scholar 

  • Welling A, Moritz T, Tapio Palva E, Juntilla O (2002) Independent activation of cold acclimation by low temperature and short photoperiod in hybrid aspen. Plant Physiol 129:1633–1641

    Article  CAS  PubMed  Google Scholar 

  • Whitehead FH, Myerscough PJ (1962) Growth Analysis of Plants. The ratio of mean relative growth rate to mean relative rate of leaf area increase. New Phytol 61:314–321

    Article  Google Scholar 

  • Wullschleger SD, Jansson S, Taylor G (2002) Genomics and forest biology: Populus emerges as the perennial favorite. Plant Cell 14:2651–2655

    Article  CAS  PubMed  Google Scholar 

  • Yu Q, Mäntyla N, Salonen M (2001) Rooting of hybrid clones of Populus tremula L. X P. tremuloides Michx. By stem cuttings derived from micropropagated plants. Scand J For Res 16:238–245

    Article  Google Scholar 

Download references

Acknowledgments

We are indebted to the staff at Skogforsk in Ekebo and Sävar and to the local “Skogsvårdsstyrelser” who have been instrumental in the creation of the SwAsp collection. This work was supported by grants from the Kempe Foundation, the Foundation for Strategic Research, and the Swedish Research Council.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Stefan Jansson.

Additional information

Communicated by W. Boerjan

Electronic supplementary material

Below is the link to the electronic supplementary material

11295_2007_108_MOESM1_ESM.pdf

Rights and permissions

Reprints and permissions

About this article

Cite this article

Luquez, V., Hall, D., Albrectsen, B.R. et al. Natural phenological variation in aspen (Populus tremula): the SwAsp collection. Tree Genetics & Genomes 4, 279–292 (2008). https://doi.org/10.1007/s11295-007-0108-y

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11295-007-0108-y

Keywords

Navigation