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Malting quality quantitative trait loci on a high-density map of Mikamo golden × Harrington cross in barley (Hordeum vulgare L.)

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Abstract

A high-density map consisting of 550 markers was constructed based on the segregation data of 95 doubled-haploid lines (DHLs) derived from the cross between a Japanese barley cultivar, Mikamo Golden and a North American barley cultivar, Harrington (MH-DHLs). Quality traits of malt extract (EX), total nitrogen (TN), soluble nitrogen (SN), Kolbach index (KI), diastatic power (DP), wort beta-glucan (WG) and viscosity (VS) were determined in three site/year crops. Quantitative trait loci (QTL) analyses were performed with these quality data sets, using the linkage map. Major QTL controlling EX, SN and KI were mapped on terminal region of 5H with Harrington as effective allele. Another QTL controlling EX was mapped on 2H with Mikamo Golden as effective allele. QTL controlling TN, DP, WG and VS were detected variably in terms of flanking markers and chromosomes depending on site/year. Cleaved amplified polymorphic sequences (CAPS) markers for EX based on the QTL detected on 2H and 5H were developed. Analysis of EX and genotypes of 33 malting barley cultivars from around the world as well as MH-DHLs revealed that the two CAPS marker on 2H and 5H affect EX by a significant difference, suggesting that the two CAPS markers were valuable for marker-assisted selection in malting barley breeding.

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References

  • Bezant JH, Laurie DA, Pratchett N, Chojecki J, Kearsey MJ (1997) Mapping of QTL controlling NIR predicted hot water extract and grain nitrogen content in a spring barley cross using marker-regression. Plant Breed 116:141–145

    Article  CAS  Google Scholar 

  • Chelkowski J, Tyrka M, Sobkiewiczi A (2003) Resistance genes in barley (Hordeum vulgare L.) and their identification with molecular markers. J Appl Genet 44:291–309

    PubMed  Google Scholar 

  • Clancy JA, Han F, Ullrich SE, The North American Barley Genome Project (2003) Comparative mapping of α-amylase activity QTLs among three barley crosses. Crop Sci 43:1043–1052

    Article  CAS  Google Scholar 

  • Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou M, Varshney R, Chao S, Szucs P, Sato K, Waugh R, Hayes PM, Matthews DE, Marshall DF, Muehlbauer GJ, Graner A, DeYoung J, Madishetty K, Fenton RD, Condamine P (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582

    Article  PubMed  Google Scholar 

  • Collins HM, Logue SJ, Jefferies SP, Barr AR (2001) Validation of markers for malt extract, DP, alpha amylase and beta amylase. In: Proceedings of the 10th Australian Barley Technical Symposium, Canberra

  • Collins HM, Panozzo JF, Logue SJ, Jefferies SP, Barr AR (2003) Mapping and validation of chromosome regions associated with high malt extract in barley (Hordeum vulgare L). Aust J Agric Res 54:1123–1240

    Article  Google Scholar 

  • Elía M, Swanston JS, Moralejo M, Casas A, Pérez-Vendrell AM, Ciudad FJ, Thomas WTB, Smith PL, Ullrich SE, Molina-Cano JL (2010) A model of the genetic differences in malting quality between European and North American barley cultivars based on a QTL study of the cross Triumph × Morex. Plant Breed 129:280–290

    Article  Google Scholar 

  • Emebiri L, Michael P, Moody DB, Ogbonnaya FC, Black C (2009) Pyramiding QTLs to improve malting quality in barley: gains in phenotype and genetic diversity. Mol Breed 23:219–228

    Article  CAS  Google Scholar 

  • European Brewery Convention (1998) ‘Analytica EBC’. Method 4.5. Congress Method. Fachverlag Hans Carl, Nurnberg, Germany

  • Fox GP, Panozzo JF, Li CD, Lance RCM, Inkerman PA, Henry RJ (2003) Molecular basis of barley quality. Aust J Agr Res 54:1081–1101

    Article  CAS  Google Scholar 

  • Hayes PM, Liu BH, Knapp SJ, Chen F, Jones B, Blake T, Franckowiak J, Rasmusson D, Sorrells M, Ullrich SE, Wesenberg D, Kleinhofs A (1993) Quantitative trait locus effects and environmental interaction in a sample of North-American barley germ plasm. Theor Appl Genet 87:392–401

    Google Scholar 

  • Igartua E, Edney M, Rossnagel BG, Spaner D, Legge WG, Scoles GJ, Eckstein PE, Penner GA, Tinker NA, Briggs KG, Falk DE, Mather DE (2000) Marker-based selection of QTL affecting grain and malt quality in two-row barley. Crop Sci 40:1426–1433

    Article  CAS  Google Scholar 

  • Igartua E, Hayes PM, Thomas WTB, Meyer R, Mather DE (2002) Genetic control of quantitative grain and malt quality traits in barley. J Crop Prod 5:131–164

    Article  CAS  Google Scholar 

  • Iimure T, Kihara M, Ichikawa S, Ito K, Takeda K, Sato K (2011) Development of DNA markers associated with beer foam stability for barley breeding. Theor Appl Genet 122:199–210

    Article  PubMed  CAS  Google Scholar 

  • Iwasa T, Takahashi H, Takeda K (1999) QTL mapping for water sensitivity in barley seeds. Bull Res Inst Bioresour Okayama Univ 6:21–28

    Google Scholar 

  • Karakousis A, Barr AR, Kretschmer JM, Manning S, Logue SJ, Roumeliotis S, Collins HM, Chalmers KJ, Li CD, Lance RCM, Langridge P (2003) Mapping and QTL analysis of the barley population Galleon × Haruna Nijo. Aust J Agric Res 54:1131–1135

    Article  CAS  Google Scholar 

  • Kihara M, Okada Y, Saito W, Kawada N, Kaneko T, Asakura T, Ito K (2006) QTL analysis for proteinase activity based on the double-haploid progeny of standard Japanese and North American malting barley cultivars. MBAA TQ 43:15–18

    CAS  Google Scholar 

  • Li CD, Tarr A, Lance RCM, Harasymow S, Uhlmann J, Westcot S, Young KJ, Grime CR, Cakir M, Broughton S, Appels R (2003) A major QTL controlling seed dormancy and pre-harvest sprouting/grain α-amylase in two-rowed barley (Hordeum vulgare L.). Aust J Agric Res 54:1303–1313

    Article  CAS  Google Scholar 

  • Li C, Ni P, Francki M, Hunter A, Zhang Y, Schibeci D et al (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice–wheat–barley comparison. Funct Integr Genomics 4:84–93

    Article  PubMed  CAS  Google Scholar 

  • Li J, Båga M, Rossnagel BG, Legge WG, Chibbar RN (2008) Identification of quantitative trait loci for β-glucan concentration in barley grain. J Cereal Sci 48:647–655

    Article  CAS  Google Scholar 

  • Lin R, Horsley RD, Lapitan NLV, Ma Z, Schwarz PB (2009) QTL mapping of dormancy in barley using the Harrington/Morex and Chevron/Stander mapping populations. Crop Sci 49:841–849

    Article  Google Scholar 

  • Marquez-Cedillo LA, Hayes PM, Jones BL, Kleinhofs A, Legge WG, Rossnagel BG, Sato K, Ullrich SE, Wesenberg DM (2000) QTL analysis of malting quality in barley based on the doubled-haploid progeny of two elite North American cultivars representing different germplasm groups. Theor Appl Genet 101:173–184

    Article  CAS  Google Scholar 

  • Mather DE, Tinker NA, Laberge DE, Edney M, Jones BL, Rossnagel BG, Legge WG, Briggs KK, Irvine RB, Falk DE (1997) Regions of the genome that affect grain and malt quality in a North American two-row barley cross. Crop Sci 37:544–554

    Article  CAS  Google Scholar 

  • Miyazaki CE, Osanai K, Saeki N, Hirota N, Ito K, Ukai Y, Konishi T, Saito A (2000) Construction of a barley RFLP linkage map using an F2 population derived from a cross between Ko A and Mokusekko 3. Barley Genetics Newslett 30:41–43

    Google Scholar 

  • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321–4325

    Article  PubMed  CAS  Google Scholar 

  • Ogushi K, Bar AR, Takahashi S, Takoi K, Ito K (2002) Lofty Nijio: a high quality malting barley variety released from an Australian-Japanese collaboration. J Inst Brew 108:13–18

    Article  CAS  Google Scholar 

  • Okada Y, Kihara M, Saito W, Kawada N, Ito K (2006) QTL mapping for malting quality and starch-degrading enzyme activity based on the double-haploid progeny of standard Japanese and North American malting barley cultivars. MBAA TQ 43:9–14

    CAS  Google Scholar 

  • Panozzo JF, Eckermann PJ, Mather DE, Moody DB, Black CK, Collins HM, Barr AR, Lim P, Cullis BR (2007) QTL analysis of malting quality traits in two barley populations. Aust J Agric Res 58:858–866

    Article  CAS  Google Scholar 

  • Paterson AH, Tanksley SD, Sorrells ME (1991) DNA markers in crop improvement. In: Sparks DL (ed) Advances in agronomy. Academic Press, New York, pp 39–90

    Google Scholar 

  • Sato K, Takeda K (2009) An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines. Theor Appl Genet 119:613–619

    Article  PubMed  CAS  Google Scholar 

  • Sato K, Matsumoto T, Ooe N, Takeda K (2009a) Genetic analysis of seed dormancy QTL in barley. Breed Sci 59:645–650

    Article  CAS  Google Scholar 

  • Sato K, Shin-IT, Seki M, Shinozaki K, Yoshida H, Takeda K, Yamazaki Y, Conte M, Kohara Y (2009b) Development of 5006 full-length cDNAs in barley: a tool for accessing cereal genomics resources. DNA Res 16:81–89

    Google Scholar 

  • Schmalenbach I, Pillen K (2009) Detection and verification of malting quality QTLs using wild barley introgression lines. Theor Appl Genet 118:1411–1427

    Article  PubMed  Google Scholar 

  • Thomas WTB (2003) Prospects for molecular breeding of barley. Ann Appl Biol 142:1–12

    Article  CAS  Google Scholar 

  • Ullrich SE, Clancy JA, del Blanco IA, Lee H, Jitkov VA, Han F, Kleinhofs A, Matsui K (2008) Genetic analysis of preharvest sprouting in a six-row barley cross. Mol Breed 21:1380–3743

    Article  Google Scholar 

  • Wenzl P, Li H, Carling J, Zhou M, Raman H, Paul E, Hearnden P, Maier C, Xia L, Caig V, Ovesna J, Cakir M, Poulsen D, Wang J, Raman R, Smith KP, Muehlbauer GJ, Chalmers KJ, Kleinhofs A, Huttner E, Kilian A (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genomics 7:206. doi:10.1186/1471-2164-7-206

    Article  PubMed  Google Scholar 

  • Yoshida H, Taya S, Fukuda Ei, Ito H, Sohtome K, Amagai M, Kiryu M, Kato T, Seko H, Uzihara K, Kitahara S, Takeda G, Nonaka S, Kawaguchi K, Kobayashi S, Fujii T, Komatsuda M, Eskiguchi T, Kurai K, Suzuki T, Ohashi K, Yoshizawa T, Wakatabe N, Kubono M, Yamono M (1998) A new two-rowed malting barley cultivar ‘Mikamo Golden’. Bull Tochigi Agri Exp Stn 35:31–50

    Google Scholar 

  • Zhang XQ, Li CD, Panozzo JF, Westcott S, Zhang GP, Tay A, Appels R, Jones M, Lance R (2010) Dissecting the telomere region of barley chromosome 5HL using rice genomic sequences as references: new markers for tracking a complex region in breeding. Mol Breed 27:1–9. doi:10.1007/s11032-010-9408-2

    Article  Google Scholar 

Download references

Acknowledgments

We are grateful to Y. Yamaguchi, K. Ito, Y. Uchiyama, E. Kawaguchi and O. Ishikawa, the Bioresources Research and Development Department, Sapporo Breweries Ltd., for their technical assistance. We are also grateful to the University of Saskatchewan for providing the experimental field. This study was supported by the Program for Promotion of Basic Research Activities for Innovative Biosciences, Japan (PROBRAIN).

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Correspondence to Tian-su Zhou.

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Zhou, Ts., Takashi, I., Ryouichi, K. et al. Malting quality quantitative trait loci on a high-density map of Mikamo golden × Harrington cross in barley (Hordeum vulgare L.). Mol Breeding 30, 103–112 (2012). https://doi.org/10.1007/s11032-011-9602-x

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