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Study of tree architecture of apple (Malus  ×  domestica Borkh.) by QTL analysis of growth traits

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Abstract

Apple tree architecture is naturally very diverse, but for fruit production, certain tree habits are more desirable than others. Here we describe the results of a QTL analysis performed to study the genetic control of growth traits in apple. This was carried out on the progeny of a cross between two apple cultivars of contrasting tree architectures. “Telamon” has a columnar tree form and “Braeburn” has a more standard, “normal” growth habit. The growth traits were measured on the F 1 seedlings of the Telamon  ×  Braeburn population for two consecutive years of growth on own roots and for the first year of growth on M9 rootstock. QTL analysis was carried out using either the Kruskal–Wallis method or the Multiple QTL Method. For all but one growth characteristic, significant QTLs were detected. A major cluster of QTLs was located in the Co gene region of “Telamon”, confirming the major influence of the Co gene on tree architecture, although this influence changed as the plant material aged and was generally more pronounced for rootstock-grown plants. Additional QTL results suggest the occurrence of genes with pleiotropic effects on tree architecture. The observed QTL instability over different years and for different root systems indicates that the genetic control of tree architecture is largely influenced by environmental factors and probably changes as the tree matures. Finally, a major influence of the root system on all the traits determining tree architecture was clearly demonstrated.

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References

  • Asins MJ, Mestre P, Garcia JE, Dicenta F, Carbonell EA (1994) Genotype–environment interaction in QTL analysis of an intervarietal almond cross by means of genetic markers. Theor Appl Genet 89:358–364

    Article  Google Scholar 

  • Brown CL, McAlpine RG, Kormanik PP (1967) Apical dominance and form in woody plants: a reappraisal. Am J Bot 54:153–162

    Article  Google Scholar 

  • Cline MG (1991) Apical dominance. Bot Rev 57:318–358

    Google Scholar 

  • Cline MG (1997) Concepts and terminology of apical dominance. Am J Bot 84:1064–1069

    Article  Google Scholar 

  • Conner PJ, Brown SK, Weeden NF (1998) Molecular marker analysis of quantitative traits for growth and development in juvenile apple trees. Theor Appl Genet 96:1027–1035

    Article  CAS  Google Scholar 

  • Crabbé J (1987) Aspects particulier de la morhogénèse caulinaire des végétaux ligneux et introduction à leur étude quantitative. Institut pour l’encouragement de la reserche scientifique dans l’industrie et l’agriculture (I.R.S.I.A.), Bruxelles

  • De Wit I, Keulemans J, Cook NC (2002) Architectural analysis of 1-year-old apple seedlings according to main schoot growth and sylleptic branching characteristics. Trees 16:473–478

    Article  Google Scholar 

  • Gupta AP, Lewontin RC (1982) A study of reaction norms in natural populations of Drosophila pseudoobscura. Evolution 36:934–948

    Article  Google Scholar 

  • Hallé F, Oldeman RAA, Tomlinson PB (1978) Tropical trees and forests. An architectural analysis. Springer-Verlag, Berlin, Heidelberg, New York

    Google Scholar 

  • Hemmat M, Weeden NF, Conner PJ, Brown SK (1997) A DNA marker for columnar growth habit in apple contains a simple sequence repeat. J Am Soc Hort Sci 122:347–349

    CAS  Google Scholar 

  • Jansen RC (1994) Controlling the type I and type II errors in mapping quantitative trait loci. Genetics 138:871–881

    PubMed  CAS  Google Scholar 

  • Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136:1447–1455

    PubMed  CAS  Google Scholar 

  • Jiang C, Zeng Z-B (1995) Multiple trait analysis of genetic mapping for quantitative trait loci. Genetics 140:1111–1127

    PubMed  CAS  Google Scholar 

  • Kenis K (2003) The use of molecular markers in apple breeding: genotype identification and study of tree architecture. PhD dissertation no 574, Fac Agric Appl Biol Sci, Katholieke Universiteit Leuven, Belgium

  • Kenis K, Keulemans J (2005) Genetic linkage maps of two apple cultivars (Malus  ×  domestica Borkh.) based on AFLP and microsatellite markers. Mol Breed 15:205–219

    Article  CAS  Google Scholar 

  • Kim MY, Song KJ, Hwang JH, Shin YU, Lee HJ (2003) Development of RAPD and SCAR markers linked to the Co gene conferring columnar growth habit in apple (Malus pumila Mill.). J Hort Sci Biotech 78:512–517

    CAS  Google Scholar 

  • Knott SA, Haley CS (1992) Maximum-likelihood mapping of quantitative trait loci using full-sib families. Genetics 132:1211–1222

    PubMed  CAS  Google Scholar 

  • Lapins KO (1969) Segregation of compact growth types in certain apple seedlings progenies. Can J Plant Sci 49:765–768

    Article  Google Scholar 

  • Lapins KO (1976) Inheritance of compact growth type in apple. J Am Soc Hort Sci 101:133–135

    Google Scholar 

  • Lark KG, Chase K, Adler F, Mansur LM, Orf JH (1995) Interactions between quantitative trait loci in soybean in which trait variation at one locus is conditional upon a specific allele at another. Proc Natl Acad Sci USA 92:4656–4660

    Article  PubMed  CAS  Google Scholar 

  • Lauri PE, Lespinasse JM (1993) The relationship between cultivar fruiting type and fruiting branch characteristics in apple trees. Acta Hort 349:259–263

    Google Scholar 

  • Lauri PE, Térouanne E, Lespinasse JM, Regnard J-M, Kelner J-J (1995) Genotypic differences in the axillary bud growth and fruiting pattern of apple fruiting branches over several years – An approach to regulation of fruit bearing. Sci Hort 64:265–281

    Article  Google Scholar 

  • Lawson DM, Hemmat M, Weeden NF (1995) The use of molecular markers to analyze the inheritance of morphological and developmental traits in apple. J␣Am Soc Hort Sci 120:532–537

    Google Scholar 

  • Lespinasse JM, Delort JF (1986) Apple tree management in vertical axis: appraisal after ten years of experiments. Acta Hort 160:139–155

    Google Scholar 

  • Liebhard R, Kellerhals M, Pfammatter W, Jertmini M, Gessler C (2003) Mapping quantitative physiological traits in apple (Malus  ×  domestica Borkh). Plant Mol Biol 52:511–526

    Article  PubMed  CAS  Google Scholar 

  • Maliepaard C, Van Ooijen JW (1994) QTL mapping in a full-sib family of an outcrossing species. In: Van Ooijen JW, Jansen J (eds) Biometrics in plant breeding: applications of molecular markers. Proc meeting of the Eucarpia section biometrics in plant breeding, 6–8 July 1994, Wageningen, The Netherlands, pp 140–146

  • Meulenbroek B, Verhaegh J, Janse J (1999) Inheritance studies with columnar type trees. Acta Hort 484:255–259

    Google Scholar 

  • Paterson AH, Damon S, Hewitt JD, Zamir D, Rabinowitch HD, Lincoln SE, Lander ES, Tanksley SD (1991) Mendelian factors underlying quantitative traits in tomato: comparison across species, generations, and environments. Genetics 127:181–197

    PubMed  CAS  Google Scholar 

  • Plomion C, Durel C-E, O’Malley D (1996) Genetic dissection of height in maritime pine seedlings raised under accelerated growth condition. Theor Appl Genet 93:849–858

    CAS  Google Scholar 

  • Tobutt KR (1985) Breeding columnar apples at East Malling. Acta Hort 159:63–68

    Google Scholar 

  • Tobutt KR (1989) La création d’arbres colonnaires pour le nouveaux systemes de vergers. Le Fruit Belge 57:101–106

    Google Scholar 

  • Tobutt KR (1994) Combining apetalous parthenocarpy with columnar growth habit in apple. In: Schmidt H, Kellerhals M (eds) Progress in temperate fruit breeding. Kluwer Academic Publishers, pp 221–224

  • Tromp J (1992) Lateral shoot formation in apple in the first year after budding as affected by air humidity and soil temperature. Acta Hort 322:141–151

    Google Scholar 

  • Tromp J (1993) Lateral shoot formation and flower-bud formation in apple in the first year after budding as affected by air temperature and exposure to red light. J Hort Sci 68:255–260

    Google Scholar 

  • Tromp J (1996) Sylleptic shoot formation in young apple trees exposed to various soil temperature and air humidity regimes in three successive periods of the growing season. Ann Bot 77:63–70

    Article  Google Scholar 

  • Tsarouhas V, Gullberg U, Lagercrantz U (2002) An AFLP and RFLP linkage map and quantitative trait locus (QTL) analysis of growth traits in Salix. Theor Appl Genet 105:277–288

    Article  PubMed  CAS  Google Scholar 

  • Van Ooijen JW (1999) LOD significance thresholds for QTL analysis in experimental populations of diploid species. Heredity 83:613–624

    Article  PubMed  Google Scholar 

  • Van Ooijen JW, Voorrips RE (2001) JoinMap® 3.0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands

    Google Scholar 

  • Van Ooijen JW, Boer MP, Jansen RC, Maliepaard C (2002) MapQTL® 4.0, Software for the calculation of QTL positions on genetic maps. Plant Research International, Wageningen, The Netherlands

    Google Scholar 

  • Xiao J, Li J, Yuan L, Tanksley SD (1995) Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross. Theor Appl Genet 92:230–244

    Article  Google Scholar 

Download references

Acknowledgements

This research was funded by the “Instituut voor de aanmoediging van Innovatie door Wetenschap en Technologie in Vlaanderen” (I.W.T.).

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Correspondence to K. Kenis.

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Kenis, K., Keulemans, J. Study of tree architecture of apple (Malus  ×  domestica Borkh.) by QTL analysis of growth traits. Mol Breeding 19, 193–208 (2007). https://doi.org/10.1007/s11032-006-9022-5

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  • DOI: https://doi.org/10.1007/s11032-006-9022-5

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