Skip to main content

Advertisement

Log in

Return to the Malay Archipelago: the biogeography of Sundaic rainforest birds

  • Review
  • Published:
Journal of Ornithology Aims and scope Submit manuscript

Abstract

During the last 15–20 years, phylogenetic, phylogeographic, paleontological, geological, and habitat modeling studies have improved our knowledge of Sundaic biogeography dramatically. In light of these advances, we review (or postulate) where Sundaic rainforest birds came from, the causes of their endemism, and the influence of Pleistocene climatic perturbations on their diversification. We suggest that four scenarios make up a coherent, plausible explanation of patterns of extant diversity. First, relictual lineages, which represent hangovers from the warm, wet Eocene, survived the hard climatic times of the colder, drier Oligocene and Pliocene in the mountains and adjacent lowlands of eastern Borneo, where rainforest has existed continuously for the last 20–30 million years. Second, most modern SE Asian genera developed during the Miocene. Third, the rainforest of Sundaland and its avifauna were largely isolated from the rest of SE Asia during the late Miocene and Pliocene by seasonal habitats in southern Indochina and ocean boundaries elsewhere, increasing regional endemism. Finally, the advent of global glaciation in the Pleistocene introduced a different diversification dynamic to Sundaland. Early glacial events caused sufficient drying in central Sundaland to fragment rainforest and its avifauna into refugia in eastern and western Sundaland and to allow dry-habitat taxa to reach Java from Indochina. More recent glacial events resulted in sufficient perhumid habitat in central Sundaland to reconnect previously vicariated rainforest populations, creating the lowland and elevational parapatry we see today. This Pleistocene dynamic was probably not simply one period of separation and one period of connection, but rather a complex interplay of isolation and colonization, influenced by highly variable population sizes, changing levels of gene flow, and behavioral idiosyncrasies of the species involved. Throughout all of these events, Borneo played a seminal role in rainforest bird evolution by providing the habitat necessary for diversification and the long-term survival of taxa.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

References

  • Aggerbeck M, Fjeldså J, Christidis L, Fabre PH, Jønsson KA (2014) Resolving deep lineage divergences in core corvoid passerine birds supports a proto-Papuan island origin. Mol Phylogenet Evol 70:272–285

    Article  PubMed  Google Scholar 

  • Ahlquist JE, Sheldon FH, Sibley CG (1984) The relationships of the Bornean Bristlehead (Pityriasis gymnocephala) and the Black-collared Thrush (Chlamydochaera jefferyi). J Ornithol 125:129–140

    Article  Google Scholar 

  • Aitchison JC, Ali JR, Davis AM (2007) When and where did India and Asia collide? J Geophys Res 112:B05423

    Google Scholar 

  • Allen MB, Armstrong HA (2008) Arabia-Eurasia collision and the forcing of mid-Cenozoic global cooling. Palaeogeogr Palaeoclimatol Palaeoecol 265:52–58

    Article  Google Scholar 

  • Alström P, Fregin S, Norman JA, Ericson PG, Christidis L, Olsson U (2011) Multilocus analysis of a taxonomically densely sampled dataset reveal extensive non-monophyly in the avian family Locustellidae. Mol Phylogenet Evol 58:513–526

    Article  PubMed  Google Scholar 

  • Antoine P-O, Welcomme J-L, Marivaux L, Baloch I, Benammi M, Tassy P (2003) First record of Paleogene Elephantoidea (Mammalia, Proboscidea) from the Bugti Hills of Pakistan. J Vertebr Paleontol 23:977–980

    Article  Google Scholar 

  • Augustin L, Barbante C, Barnes PRF, Barnola JM, Bigler M, Castellano E, Cattani O, Chappellaz J, DahlJensen D, Delmonte B, Dreyfus G, Durand G, Falourd S, Fischer H, Fluckiger J, Hansson ME, Huybrechts P, Jugie R, Johnsen SJ, Jouzel J, Kaufmann P, Kipfstuhl J, Lambert F, Lipenkov VY, Littot GVC, Longinelli A, Lorrain R, Maggi V, Masson-Delmotte V, Miller H, Mulvaney R, Oerlemans J, Oerter H, Orombelli G, Parrenin F, Peel DA, Petit JR, Raynaud D, Ritz C, Ruth U, Schwander J, Siegenthaler U, Souchez R, Stauffer B, Steffensen JP, Stenni B, Stocker TF, Tabacco IE, Udisti R, van de Wal RSW, van den Broeke M, Weiss J, Wilhelms F, Winther JG, Wolff EW, Zucchelli M, Members EC (2004) Eight glacial cycles from an Antarctic ice core. Nature 429:623–628

    Article  PubMed  CAS  Google Scholar 

  • Bänfer G, Moog U, Fiala B, Mohamed M, Weising K, Blattner FR (2006) A chloroplast genealogy of myrmecophytic Macaranga species (Euphorbiaceae) in Southeast Asia reveals hybridization, vicariance and long-distance dispersals. Mol Ecol 15:4409–4424

    Article  PubMed  CAS  Google Scholar 

  • Barker FK, Cibois A, Schikler P, Feinstein J, Cracraft J (2004) Phylogeny and diversification of the largest avian radiation. Proc Natl Acad Sci USA 101:11040–11045

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Barry JC, Johnson NM, Raza SM, Jacobs LL (1985) Neogene mammalian faunal change in southern Asia: correlations with climatic, tectonic, and eustatic events. Geology 13:637–640

    Article  Google Scholar 

  • Barry JC, Morgan ME, Winkler AJ, Flynn LJ, Lindsay EH, Jacobs LL, Pilbeam D (1991) Faunal interchange and Miocene terrestrial vertebrates of southern Asia. Paleobiology 17:231–245

    Google Scholar 

  • Berggren WA, Prothero DR (1992) Eocene-Oligocene climatic and biotic evolution: an overview. In: Berggren WA, Prothero DR (eds) Eocene–Oligocene climatic and biotic evolution. Princeton University Press, Princeton, pp 1–28

    Chapter  Google Scholar 

  • Bettis EA, Milius AK, Carpenter SJ, Larick R, Zaim Y, Rizal Y, Ciochon RL, Tassier-Surine SA, Murray D, Bronto S (2009) Way out of Africa: early Pleistocene paleoenvironments inhabited by Homo erectus in Sangiran, Java. J Hum Evol 56:11–24

    Article  PubMed  Google Scholar 

  • Bintanja R, van de Wal SW, Oelemans J (2005) Modelled atmospheric temperatures and global sea levels of the past million years. Nature 437:125–128

    Article  PubMed  CAS  Google Scholar 

  • Bird MI, Taylor D, Hunt C (2005) Palaeoenvironments of insular Southeast Asia during the last glacial period: a savanna corridor in Sundaland? Quat Sci Rev 24:2228–2242

    Article  Google Scholar 

  • Blackburn DC, Bickford DP, Diesmos AC, Iskandar DT, Brown RM (2010) An ancient origin for the enigmatic flat-headed frogs (Bombinatoridae: Barbourula) from the islands of Southeast Asia. PLoS One 5:e12090

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Brandon-Jones D (1996) The Asian Colobinae (Mammalia: Cercopithecidae) as indicators of quaternary climatic change. Biol J Linn Soc 59:327–350

    Article  Google Scholar 

  • Brandon-Jones D (1998) Pre-glacial Bornean primate impoverishment and Wallace’s line. In: Hall R, Holloway JD (eds) Biogeography and geological evolution of SE Asia. Backhuys, Leiden, pp 393–403

    Google Scholar 

  • Brown JW, Van Tuinen M (2011) Evolving perceptions on the antiquity of the modern avian tree. Living Dinosaurs: the evolutionary history of modern birds. Wiley, New York, pp 306–324

    Chapter  Google Scholar 

  • Brown JW, Rest JS, García-Moreno J, Sorenson MD, Mindell D (2008) Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. BMC Biol 6:6. doi:10.1186/1741-7007-6-6

  • Cannon CH, Morley RJ, Bush ABG (2009) The current refugial rainforests of Sundaland are unrepresentative of their biogeographic past and highly vulnerable to disturbance. Proc Natl Acad Sci USA 106:11188–11193

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Choi DL-T (1996) Geology of Kinabalu. In: Wong, KM, A Phillipps (eds) Kinabalu, summit of Borneo. Sabah Society and Sabah Parks, Kota Kinabalu, Sabah, pp 19–29

  • Chua VL, Phillipps Q, Lim HC, Taylor SS, Gawin DF, Rahman MA, Moyle RG, Sheldon FH (2015) Phylogeography of three endemic birds of Maratua Island, a potential archive of Bornean biogeography. Raffles Bull Zool (in press)

  • Cibois A, Kalyakin MV, Han LX, Pasquet E (2002) Molecular phylogenetics of babblers (Timaliidae): Re-evaluation of the genera Yuhina and Stachyris. J Avian Biol 33:380–390

    Article  Google Scholar 

  • Cibois A, Thibault J-C, Bonillo C, Filardi CE, Watling D, Pasquet E (2014) Phylogeny and biogeography of the fruit doves (Aves: Columbidae). Mol Phylogenet Evol 70:442–453

    Article  PubMed  Google Scholar 

  • Clarke JA, Ksepka DT, Smith NA, Norell MA (2009) Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii). Zool J Linn Soc 157:586–611

    Article  Google Scholar 

  • Collar NJ (2004) Species limits in some Indonesian thrushes. Forktail 20:71–87

    Google Scholar 

  • Cottam M, Hall R, Sperber C, Armstrong R (2010) Pulsed emplacement of the Mount Kinabalu granite, northern Borneo. J Geol Soc 167:49–60

    Article  CAS  Google Scholar 

  • Cracraft J (2014) Avian higher-level relationships and classification: Passeriformes. In: Dickinson, EC, L Christidis (eds) The Howard and Moore complete checklist of the birds of the world, 4th edn, vol 2. Aves Press, Eastbourne, U.K., pp 17–45

  • Cranbrook E (2000) Northern Borneo environments of the past 40,000 years. Sarawak Mus J 55:61–109

    Google Scholar 

  • Cranbrook E (2010) Late Quaternary turnover of mammals in Borneo: the zooarchaeological record. Biodivers Conserv 19:373–391

    Article  Google Scholar 

  • Crowe TM, Bowie RCK, Bloomer P, Mandiwana TG, Hedderson TAJ, Randi E, Wakeling J (2006) Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data. Cladistics 22:1–38

    Article  Google Scholar 

  • Darlington PJ (1957) Zoogeography: the geographical distribution of animals. Wiley, New York

    Google Scholar 

  • Davison GWH (1999) Notes on the taxonomy of some Bornean birds. Sarawak Mus J 54:289–299

    Google Scholar 

  • de Bruyn M, Stelbrink B, Morley RJ, Hall R, Carvalho GR, Cannon CH, van den Bergh G, Meijaard E, Metcalfe I, Boitani L, Maiorano L, Shoup R, von Rintelen K (2014) Borneo and Indochina are major evolutionary hotspots for Southeast Asian biodiversity. Syst Biol 63:879–901

    Article  PubMed  Google Scholar 

  • deMenocal PB (2004) African climate change and faunal evolution during the Pliocene–Pleistocene. Earth Planet Sci Lett 220:3–24

    Article  CAS  Google Scholar 

  • den Tex RJ, Leonard JA (2013) A molecular phylogeny of Asian barbets: Speciation and extinction in the tropics. Mol Phylogenet Evol 68:1–13

    Article  Google Scholar 

  • Dinesen L, Lehmberg T, Svendsen TO, Hansen LA, Fjeldså J (1994) A new genus and species of perdicine bird (Phasianidae, Perdicini) from Tanzania; a relict form with Indo-Malayan affinities. Ibis 136:3–11

    Article  Google Scholar 

  • Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Drummond AJ, Ho SYW, Phillips MJ, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4:699–710

    Article  CAS  Google Scholar 

  • Durkee EF (1993) Oil, geology and changing concepts in the Southwest Philippines (Palawan and the Sulu Sea). Bull Geol Soc Malays 33:241–262

    Google Scholar 

  • Ericson PG (2012) Evolution of terrestrial birds in three continents: biogeography and parallel radiations. J Biogeogr 39:813–824

    Article  Google Scholar 

  • Ericson PG, Irestedt M, Johansson US (2003) Evolution, biogeography, and patterns of diversification in passerine birds. J Avian Biol 34:3–15

    Article  Google Scholar 

  • Ericson PGP, Klopstein S, Irestedt M, Nguyen JMT, Nylander JAA (2014) Dating the divergence of major lineages of Passeriformes. BMC Evol Biol 14(8):1–15

    Google Scholar 

  • Esselstyn JA, Oliveros CH, Moyle RG, Peterson AT, McGuire JA, Brown RM (2010) Integrating phylogenetic and taxonomic evidence illuminates complex biogeographic patterns along Huxley’s modification of Wallace’s Line. J Biogeogr 37:2054–2066

    Article  Google Scholar 

  • Fabre PH, Irestedt M, Fjeldså J, Bristol R, Groombridge JJ, Irham M, Jønsson KA (2012) Dynamic colonization exchanges between continents and islands drive diversification in paradise-flycatchers (Terpsiphone, Monarchidae). J Biogeogr 39:1900–1918

    Article  Google Scholar 

  • Feduccia A (1999) The origin and evolution of birds, 2nd edn. Yale University Press, New Haven

    Google Scholar 

  • Feduccia A (2003) ‘Big bang’for tertiary birds? Trends Ecol Evol 18:172–176

    Article  Google Scholar 

  • Fernando P, Vidya TNC, Payne J, Stuewe M, Davison G, Alfred RJ, Andau P, Bosi E, Kilbourn A, Melnick DJ (2003) DNA analysis indicates that Asian elephants are native to Borneo and are therefore a high priority for conservation. PloS Biol 1:110–115

    Article  CAS  Google Scholar 

  • Fjeldså J (2013) The global diversification of songbirds (Oscines) and the build-up of the Sino-Himalayan diversity hotspot. Chin Birds 4:132–143

    Article  Google Scholar 

  • Fjeldså J, Bowie RCK (2008) New perspectives on the origin and diversification of Africa’s forest avifauna. Afr J Ecol 46:235–247

    Article  Google Scholar 

  • Fuchs J, Fjeldså J, Bowie RCK, Voelker G, Pasquet E (2006a) The African warbler genus Hyliota as a lost lineage in the Oscine songbird tree: molecular support for an African origin of the Passerida. Mol Phylogenet Evol 39:186–197

    Article  PubMed  CAS  Google Scholar 

  • Fuchs J, Ohlson JI, Ericson PGP, Pasquet E (2006b) Molecular phylogeny and biogeographic history of the piculets (Piciformes: Picumninae). J Avian Biol 37:487–496

    Article  Google Scholar 

  • Gardner JL, Trueman JW, Ebert D, Joseph L, Magrath RD (2010) Phylogeny and evolution of the Meliphagoidea, the largest radiation of Australasian songbirds. Mol Phylogenet Evol 55:1087–1102

    Article  PubMed  Google Scholar 

  • Gathorne-Hardy FJ, Syaukani Davies RG, Eggleton P, Jones DT (2002) Quaternary rainforest refugia in south-east Asia: using termites (Isoptera) as indicators. Biol J Linn Soc 75:453–466

    Article  Google Scholar 

  • Gawin DF (2014) Population genetic and hybridization studies of three Bornean birds species: Mountain Black-eye (Chlorocharis emiliae), White-rumped Shama (Copsychus malabaricus), and Oriental Magpie-Robin (Copsychus saularis). In: PhD thesis, Louisiana State University, Baton Rouge

  • Gawin DF, Rahman MA, Ramji MFS, Smith BT, Lim HC, Moyle RG, Sheldon FH (2014) Patterns of avian diversification in Borneo: the case of the endemic Mountain Black-eye (Chlorocharis emiliae). Auk Adv Ornithol 131:86–99

    Google Scholar 

  • Gill F, Donsker D (2014) IOC world bird list (v 4.4). Available at: http://www.worldbirdnames.org/

  • Gonzalez J-CT (2012) Origin and diversification of hornbills (Bucerotidae). Oxford University, Oxford

    Google Scholar 

  • Gonzalez J-CT, Sheldon BC, Collar NJ, Tobias JA (2013) A comprehensive molecular phylogeny for the hornbills (Aves: Bucerotidae). Mol Phylogenet Evol 67:468–483

    Article  PubMed  CAS  Google Scholar 

  • Gorog AJ, Sinaga MH, Engstrom MD (2004) Vicariance or dispersal? Historical biogeography of three Sunda shelf murine rodents (Maxomys surifer, Leopoldamys sabanus and Maxomys whiteheadi). Biol J Linn Soc 81:91–109

    Article  Google Scholar 

  • Hall R (1998) The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. In: Hall R, Holloway JD (eds) Biogeography and geological evolution of SE Asia. Backhuys, Leiden, pp 99–131

    Google Scholar 

  • Hall R (2002) Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: computer-based reconstructions and animations. J Asian Earth Sci 20:353–434

    Article  Google Scholar 

  • Hall R (2009) Southeast Asia’s changing palaeogeography. Blumea Biodivers Evol Biogeogr Plants 54:1–3

    Article  Google Scholar 

  • Hall R (2012) Sundaland and Wallacea: geology, plate tectonics and palaeogeography. In: Gower DJ, Johnson KG, Richardson JE, Rosen BR, Rüber L, Williams ST (eds) Biotic evolution and environmental change in Southeast Asia. Cambridge University Press, Cambridge, pp 32–78

    Chapter  Google Scholar 

  • Hall R (2013) The palaeogeography of Sundaland and Wallacea since the Late Jurassic. J Limnol 72(s2):1–17

    Google Scholar 

  • Hall R, Nichols G (2002) Cenozoic sedimentation and tectonis in Borneo: climatic influences on orogenesis. Geol Soc Lond Spec Publ 191:5–22

    Article  Google Scholar 

  • Handiani D, Paul A, Prange M, Merkel U, Dupont L, Zhang X (2013) Tropical vegetation response to Heinrich Event 1 as simulated with the UVic ESCM and CCSM3. Clim Past 9:1683–1696

    Article  Google Scholar 

  • Hanebuth T, Stattegger K, Grootes PM (2000) Rapid flooding of the Sunda Shelf: a late-glacial sea-level record. Science 288:1033–1035

    Article  PubMed  CAS  Google Scholar 

  • Harzhauser M, Kroh A, Mandic O, Piller WE, Göhlich U, Reuter M, Berning B (2007) Biogeographic responses to geodynamics: a key study all around the Oligo-Miocene Tethyan Seaway. Zool Anz 246:241–256

    Article  Google Scholar 

  • Heaney LR (1986) Biogeography of mammals in SE Asia: estimates of rates of colonization, extinction and speciation. Biol J Linn Soc 28:127–165

    Article  Google Scholar 

  • Heaney LR (1991) A synopsis of climatic and vegetational change in Southeast Asia. Clim Change 19:53–61

    Article  Google Scholar 

  • Hirai H, Wijayanto H, Tanaka H, Mootnick AR, Hayano A, Perwitasari-Farajallah D, Iskandriati D, Sajuthi D (2005) A whole-arm translocation (WAT8/9) separating Sumatran and Bornean agile gibbons, and its evolutionary features. Chromosome Res 13:123–133

    Article  PubMed  CAS  Google Scholar 

  • Ho SY, Phillips MJ (2009) Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Syst Biol 58:367–380

    Article  PubMed  Google Scholar 

  • Holt BG, Lessard J-P, Borregaard MK, Fritz SA, Araújo MB, Dimitrov D, Fabre P-H, Graham CH, Graves GR, Jønsson KA (2013) An update of Wallace’s zoogeographic regions of the world. Science 339:74–78

    Article  PubMed  CAS  Google Scholar 

  • Hosner PA, Sheldon FH, Lim HC, Moyle RG (2010) Phylogeny and biogeography of the Asian trogons (Aves: Trogoniformes) inferred from nuclear and mitochondrial DNA sequences. Mol Phylogenet Evol 57:1219–1225

    Article  PubMed  CAS  Google Scholar 

  • Hu J, Pa Peng, Fang D, Jia G, Jian Z, Wang P (2003) No aridity in Sunda Land during the Last Glaciation: evidence from molecular-isotopic stratigraphy of long-chain n-alkanes. Palaeogeogr Palaeoclimatol Palaeoecol 201:269–281

    Article  Google Scholar 

  • Hughes JB, Round PD, Woodruff DS (2003) The Indochinese-Sundaic faunal transition at the Isthmus of Kra: an analysis of resident forest bird species distributions. J Biogeogr 30:569–580

    Article  Google Scholar 

  • Irestedt M, Johansson US, Parsons TJ, Ericson PGP (2001) Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data. J Avian Biol 32:15–25

    Article  Google Scholar 

  • Iwanaga H, Teshima KM, Khatab IA, Inomata N, Finkeldey R, Siregar IZ, Siregar UJ, Szmidt AE (2012) Population structure and demographic history of a tropical lowland rainforest tree species Shorea parvifolia (Dipterocarpaceae) from Southeastern Asia. Ecol Evol 2:1663–1675

    Article  PubMed  PubMed Central  Google Scholar 

  • James HF (2005) Paleogene fossils and the radiation of modern birds. Auk 122:1049–1054

    Article  Google Scholar 

  • Johansson US, Erickson C (2004) A re-evaluation of basal phylogenetic relationships within trogons (Aves: Trogonidae) based on nuclear DNA sequences. J Zool Syst Evol Res 43:166–173

    Article  Google Scholar 

  • Johansson US, Alström P, Olsson U, Ericson PGR, Sundberg P, Price TD (2007) Build-up of the Himalayan avifauna through immigration: a biogeographical analysis of the Phylloscopus and Seicercus warblers. Evolution 61:324–333

    Article  PubMed  Google Scholar 

  • Jønsson KA, Fjeldså J (2006) Determining biogeographical patterns of dispersal and diversification in oscine passerine birds in Australia, Southeast Asia and Africa. J Biogeogr 33:1155–1165

    Article  Google Scholar 

  • Jønsson KA, Fjeldså J, Ericson PGP, Irestedt M (2007) Systematic placement of an enigmatic Southeast Asian taxon Eupetes macrocerus and implications for the biogeography of a main songbird radiation, the Passerida. Biol Lett 3:323–326

    Article  PubMed  PubMed Central  Google Scholar 

  • Jønsson KA, Irestedt M, Fuchs J, Ericson PGP, Christidis L, Bowie RCK, Norman JA, Pasquet E, Fjeldså J (2008) Explosive avian radiations and multi-directional dispersal across Wallacea: evidence from the Campephagidae and other Crown Corvida (Aves). Mol Phylogenet Evol 47:221–236

    Article  PubMed  Google Scholar 

  • Jønsson KA, Bowie RCK, Moyle RG, Christidis L, Norman JA, Benz BW, Fjeldså J (2010a) Historical biogeography of an Indo-Pacific passerine bird family (Pachycephalidae): different colonization patterns in the Indonesian and Melanesian archipelagos. J Biogeogr 37:245–257

    Article  Google Scholar 

  • Jønsson KA, Bowie RCK, Moyle RG, Irestedt M, Christidis L, Norman JA, Fjeldså J (2010b) Phylogeny and biogeography of Oriolidae (Aves: Passeriformes). Ecography 33:232–241

    Google Scholar 

  • Jønsson KA, Irestedt M, Ericson PGP, Fjeldså J (2010c) A molecular phylogeny of minivets (Passeriformes: Campephagidae: Pericrocotus): implications for biogeography and convergent plumage evolution. Zool Scr 39:1–8

    Article  Google Scholar 

  • Jønsson KA, Fabre PH, Ricklefs RE, Fjeldså J (2011) Major global radiation of corvoid birds originated in the proto-Papuan archipelago. Proc Natl Acad Sci USA 108:2328–2333

    Article  PubMed  PubMed Central  Google Scholar 

  • Jønsson KA, Irestedt M, Christidis L, Clegg SM, Holt BG, Fjeldså J (2014) Evidence of taxon cycles in an Indo-Pacific passerine bird radiation (Aves: Pachycephala). Proc R Soc B Biol Sci 281:20131727

    Article  Google Scholar 

  • Kashiwaya K, Ochiai S, Sakai H, Kawai T (2001) Orbit-related long-term climate cycles revealed in a 12-Myr continental record from Lake Baikal. Nature 410:71–74

    Article  PubMed  CAS  Google Scholar 

  • Kershaw A, Van Der Kaars S, Flenley J (2007) The Quaternary history of far eastern rainforests. Tropical rainforest responses to climatic change. Springer-Praxis, Chichester, pp 77–115

    Chapter  Google Scholar 

  • Kimball RT, Braun EL, Ligon JD, Lucchini V, Randi E (2001) A molecular phylogeny of the peacock-pheasants (Galliformes: Polyplectron spp.) indicates loss and reduction of ornamental traits and display behaviours. Biol J Linn Soc 73:187–198

    Google Scholar 

  • Klicka J, Voelker G, Spellman GM (2005) A molecular phylogenetic analysis of the “true thrushes”. Mol Phylogenet Evol 34:486–500

    Article  PubMed  CAS  Google Scholar 

  • Koufos GD, Kostopoulos DS, Vlachou TD (2005) Neogene/Quaternary mammalian migrations in Eastern Mediterranean. Belg J Zool 135:181–190

    Google Scholar 

  • Ksepka DT, Clarke JA (2009) Affinities of Palaeospiza bella and the phylogeny and biogeography of mousbirds (Coliiformes). Auk 126:245–259

    Article  Google Scholar 

  • Kumar P, Yuan X, Kumar MR, Kind R, Li X, Chadha R (2007) The rapid drift of the Indian tectonic plate. Nature 449:894–897

    Article  PubMed  CAS  Google Scholar 

  • Kundu S, Jones CG, Prys-Jones RP, Groombridge JJ (2012) The evolution of the Indian Ocean parrots (Psittaciformes): extinction, adaptive radiation and eustacy. Mol Phylogenet Evol 62:296–305

    Article  PubMed  CAS  Google Scholar 

  • Li Z, Powell CM (2001) An outline of the palaeogeographic evolution of the Australasian region since the beginning of the Neoproterozoic. Earth Sci Rev 53:237–277

    Article  Google Scholar 

  • Li XW, Walker D (1986) The plant geography of Yunnan Province, southwest China. J Biogeogr 13:367–397

    Article  Google Scholar 

  • Li J-T, Li Y, Klaus S, Rao D-Q, Hillis DM, Zhang Y-P (2013) Diversification of rhacophorid frogs provides evidence for accelerated faunal exchange between India and Eurasia during the Oligocene. Proc Natl Acad Sci USA 110:3441–3446

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Lim HC, Sheldon FH (2011) Multilocus analysis of the evolutionary dynamics of rainforest bird populations in Southeast Asia. Mol Ecol 20:3414–3438

    Article  PubMed  Google Scholar 

  • Lim HC, Zou F, Taylor SS, Marks BD, Moyle RG, Voelker G, Sheldon FH (2010) Phylogeny of magpie-Robins and shamas (Aves: Turdidae: Copsychus and Trichixos): implications for island biogeography in Southeast Asia. J Biogeogr 37:1894–1906

    Google Scholar 

  • Lim HC, Rahman MA, Lim SLH, Moyle RG, Sheldon FH (2011) Revisiting Wallace’s haunt: coalescent simulations and comparative niche modeling reveal historical mechanisms that promoted avian population divergence in the Malay Archipelago. Evolution 65:321–334

    Article  PubMed  Google Scholar 

  • Lim HC, Chua VL, Benham PM, Oliveros CH, Rahman MA, Moyle RG, Sheldon FH (2014) Divergence history of the Rufous-tailed Tailorbird (Orthotomus sericeus) of Sundaland: implications for the biogeography of Palawan and the taxonomy of island species in general. Auk 131:629–642

    Article  Google Scholar 

  • Lohman DJ, de Bruyn M, Page T, von Rintelen K, Hal R, Ng PKL, Shih HT, Carvalho GR, von Rintelen T (2011) Biogeography of the Indo-Australian Archipelago. Annu Rev Ecol Evol Syst 42:205–226

  • Louys J, Meijaard E (2010) Palaeoecology of Southeast Asian megafauna-bearing sites from the Pleistocene and a review of environmental changes in the region. J Biogeogr 37:1432–1449

    Google Scholar 

  • MacKinnon JR, Phillipps K (1999) A field guide to the birds of Borneo, Sumatra, Java and Bali. Oxford University Press, Oxford

    Google Scholar 

  • Mann CF (2008) The birds of Borneo, an annotated checklist. British Ornithologists’ Union and British Ornithologists’ Club, Peterborough

    Google Scholar 

  • Mayr E (1944) Wallace’s line in light of recent zoogeographic studies. Q Rev Biol 19:1–14

    Article  Google Scholar 

  • Mayr G (2005) The Paleogene fossil record of birds in Europe. Biol Rev 80:515–542

    Article  PubMed  Google Scholar 

  • Mayr G (2013) The age of the crown group of passerine birds and its evolutionary significance–molecular calibrations versus the fossil record. Syst Biodivers 11:7–13

    Article  Google Scholar 

  • Mayr G (2014) The origins of crown group birds: molecules and fossils. Palaeontology 57:231–242

    Article  Google Scholar 

  • Medway L (1972) The Quaternary mammals of Malesia: a review. In: Ashton P, Ashton M (eds) Transactions of the second Aberdeen-Hull symposium on Malesian ecology. University of Hull, Hull, pp 63–83

    Google Scholar 

  • Medway L, Wells DR (1976) The birds of the Malay Peninsula, vol 5. H.F. & G. Witherby, London

    Google Scholar 

  • Mees GF (1986) A list of birds recorded from Bangka Island, Indonesia. Zool Verh Leiden 232:1–176

    Google Scholar 

  • Mees GF (1996) Geographical variation in birds of Java. Publ Nuttall Ornithol Club 26:1–119

    Google Scholar 

  • Meijaard E (2003) Mammals of south-east Asian islands and their Late Pleistocene environments. J Biogeogr 30:1245–1257

    Article  Google Scholar 

  • Meijaard E, Groves C (2004) The biogeographical evolution and phylogeny of the genus Presbytis. Primate Rep 68:71–90

    Google Scholar 

  • Meijaard E, van der Zon APM (2003) Mammals of south-east Asian islands and their Late Pleistocene environments. J Biogeogr 30:1245–1257

    Article  Google Scholar 

  • Meijer HJM (2014) The avian fossil record in Insular Southeast Asia and its implications for avian biogeography and palaeoecology. PeerJ 2:e295

  • Meulenkamp JE, Sissingh W (2003) Tertiary palaeogeography and tectonostratigraphic evolution of the Northern and Southern Peri-Tethys platforms and the intermediate domains of the African-Eurasian convergent plate boundary zone. Palaeogeogr Palaeoclimatol Palaeoecol 196:209–228

    Article  Google Scholar 

  • Mittelbach GG, Schemske DW, Cornell HV, Allen AP, Brown JM, Bush MB, Harrison SP, Hurlbert AH, Knowlton N, Lessios HA, McCain CM, McCune AR, McDade LA, McPeek MA, Near TJ, Price TD, Ricklefs RE, Roy K, Sax DF, Schluter D, Sobel JM, Turelli M (2007) Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecol Lett 10:315–331

    Article  PubMed  Google Scholar 

  • Molengraaff GAF (1921) Modern deep sea research in the East Indian archipelago. Geogr J 57:95–121

    Article  Google Scholar 

  • Moltesen M, Irestedt M, Fjeldså J, Ericson PG, Jønsson KA (2012) Molecular phylogeny of Chloropseidae and Irenidae–Cryptic species and biogeography. Mol Phylogenet Evol 65:903–914

    Article  PubMed  Google Scholar 

  • Morley RJ (1998a) Palynological evidence for Tertiary plant dispersals in the SE Asian region in relation to plate tectonic and climate. In: Hall R, Holloway JD (eds) Biogeography and geological evolution of SE Asia. Backhuys, Leiden, pp 211–234

    Google Scholar 

  • Morley RJ (1998b) Tertiary history of the Malesian flora: a palynological perspective. In: Taxonomy: the cornerstone of biodiversity: Proc 4th Int Flora Malesiana Symp. Kuala Lumpur, pp 197–210

  • Morley RJ (2000) Origin and evolution of tropical rain forests. Wiley, New York

    Google Scholar 

  • Morley RJ (2003) Interplate dispersal paths for megathermal angiosperms. Perspect Plant Ecol Evol Syst 6:5–20

    Article  Google Scholar 

  • Morley RJ (2011) Cretaceous and Tertiary climate change and the past distribution of megathermal rainforests. In: Bush M, JR Flenley (eds) Tropical rainforest responses to climatic change. Springer SBM, Berlin Heidelberg New York, pp 1–34

  • Morley RJ (2012) A review of the Cenozoic palaeoclimate history of Southeast Asia. In: Gower DJ, Johnson KG, Richardson JE, Rosen BR, Rüber L, Williams ST (eds) Biotic evolution and environmental change in Southeast Asia. Cambridge University Press, Cambridge, pp 79–114

    Chapter  Google Scholar 

  • Morley RJ, Morley HP (2011) Neogene climate history of the Makassar Straits. In: The Southeast Asian Gateway: history and tectonics of Australia-Asia collision. Geological Society of London, London, pp 319–32

  • Morley RJ, Morley HP (2013) Mid Cenozoic freshwater wetlands of the Sunda region. J Limnol 72(s2):18–35

    Google Scholar 

  • Moss SJ, Wilson MEJ (1998) Biogeographic implications of the Tertiary palaeogeographic evolution of Sulawesi and Borneo. In: Hall R, Holloway JD (eds) Biogeography and geological evolution of SE Asia. Backhuys, Leiden, pp 133–155

    Google Scholar 

  • Moyle RG (2002) Molecular systematics of barbets and trogons: pantropical biogeography, African speciation, and issues in phylogenetic inference. In: PhD thesis, Louisiana State University, Baton Rouge

  • Moyle RG (2004) Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data. Mol Phylogenet Evol 30:187–200

    Article  PubMed  CAS  Google Scholar 

  • Moyle RG (2005) Phylogeny and biogeographical history of Trogoniformes, a pantropical bird order. Biol J Linn Soc 84:725–738

    Article  Google Scholar 

  • Moyle RG, Schilthuizen M, Rahman MA, Sheldon FH (2005) Molecular phylogenetic analysis of the white-crowned forktail Enicurus leschenaulti in Borneo. J Avian Biol 36:96–101

    Article  Google Scholar 

  • Moyle RG, Chesser RT, Prum RO, Schikler P, Cracraft J (2006a) Phylogeny and evolutionary history of Old World suboscine birds (Aves : Eurylaimides). Am Mus Novit 3544:1–22

  • Moyle RG, Cracraft J, Lakim M, Nais J, Sheldon FH (2006b) Reconsideration of the phylogenetic relationships of the enigmatic Bornean Bristlehead (Pityriasis gymnocephala). Mol Phylogenet Evol 39:893–898

    Article  PubMed  CAS  Google Scholar 

  • Moyle RG, Hosner PA, Nais J, Lakim M, Sheldon FH (2008) Taxonomic status of the Kinabalu ‘linchi’ swiftlet. Bull Br Ornithol Club 128:94–100

    Google Scholar 

  • Moyle RG, Filardi CE, Smith CE, Diamond J (2009) Explosive Pleistocene diversification and hemispheric expansion of a “great speciator’’. Proc Natl Acad Sci USA 106:1863–1868

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Moyle RG, Taylor SS, Oliveros CH, Lim HC, Haines CL, Rahman MA, Sheldon FH (2011) Diversification of an insular Southeast Asian genus: Phylogenetic relationships of the spiderhunters (Aves: Nectariniidae). Auk 128:777–788

    Article  Google Scholar 

  • Moyle RG, Andersen MJ, Oliveros CH, Steinheimer FD, Reddy S (2012) Phylogeny and Biogeography of the Core Babblers (Aves: Timaliidae). Syst Biol 61:631–651

    Article  PubMed  Google Scholar 

  • Nesbitt SJ, Ksepka DT, Clarke JA (2011) Podargiform affinities of the enigmatic Fluvioviridavis platyrhamphus and the early diversification of Strisores (“Caprimulgiformes” plus Apodiformes). PloS One 6(11)

  • Newsome J, Flenley J (1988) Late Quaternary vegetational history of the Central Highlands of Sumatra. II. Palaeopalynology and vegetational history. J Biogeogr 15:555–578

    Article  Google Scholar 

  • Ohtani M, Kondo T, Tani N, Ueno S, Lee LS, Ng KKS, Muhammad N, Finkeldey R, Na’iem M, Indrioko S, Kamiya K, Harada K, Diway B, Khoo E, Kawamura K, Tsumura Y (2013) Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in South-East Asia. Mol Ecol 22:2264–2279

    Article  PubMed  CAS  Google Scholar 

  • Oliveros CH, Moyle RG (2010) Origin and diversification of Philippine bulbuls. Mol Phylogenet Evol 54:822–832

    Article  PubMed  Google Scholar 

  • Olson SL (1973) A classification of the Rallidae. Wilson Bull 85:381–416

    Google Scholar 

  • Olson SL (1979) Picathartes—another West African forest relict with probable Asian affinities. Bull Br Ornithol Club 99:112–113

    Google Scholar 

  • Pacheco MA, Battistuzzi FU, Lentino M, Aguilar RF, Kumar S, Escalante AA (2011) Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders. Mol Biol Evol 28:1927–1942

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Päckert M, Martens J, Sun YH, Severinghaus LL, Nazarenko AA, Ting J, Töpfer T, Tietze DT (2012) Horizontal and elevational phylogeographic patterns of Himalayan and Southeast Asian forest passerines (Aves: Passeriformes). J Biogeogr 39:556–573

    Article  Google Scholar 

  • Patou ML, Wilting A, Gaubert P, Esselstyn JA, Cruaud C, Jennings AP, Fickel J, Veron G (2010) Evolutionary history of the Paradoxurus palm civets–a new model for Asian biogeography. J Biogeogr 37:2077–2097

    Article  Google Scholar 

  • Phillipps Q, Phillipps K (2014) Phillipps’ field guide to the birds of Borneo, 3rd edn. John Beaufoy, Oxford

    Google Scholar 

  • Pook CE, Joger U, Stümpel N, Wüster W (2009) When continents collide: Phylogeny, historical biogeography and systematics of the medically important viper genus Echis (Squamata: Serpentes: Viperidae). Mol Phylogenet Evol 53:792–807

    Article  PubMed  Google Scholar 

  • Prentice I, Harrison S, Bartlein P (2011) Global vegetation and terrestrial carbon cycle changes after the last ice age. New Phytol 189:988–998

    Article  PubMed  CAS  Google Scholar 

  • Quek SP, Davies SJ, Ashton PS, Itino T, Pierce NE (2007) The geography of diversification in mutualistic ants: a gene’s-eye view into the Neogene history of Sundaland rain forests. Mol Ecol 16:2045–2062

    Article  PubMed  CAS  Google Scholar 

  • Ramji MFS, Rahman MA, Tuen AA (2012) Morphological variation of Mountain Blackeye (Chlorocharis emiliae) populations in Malaysian Borneo. Malays Appl Biol 41:1–10

    Google Scholar 

  • Reddy S (2008) Systematics and biogeography of the shrike-babblers (Pteruthius): species limits, molecular phylogenetics, and diversification patterns across southern Asia. Mol Phylogenet Evol 47:54–72

    Article  PubMed  CAS  Google Scholar 

  • Reddy S, Moyle RG (2011) Systematics of the scimitar babblers (Pomatorhinus: Timaliidae): phylogeny, biogeography, and species-limits of four species complexes. Biol J Linn Soc 102:846–869

    Article  Google Scholar 

  • Richardson JE, Costion CM, Muellner AN (2012) The Malesian floristic interchange: plant migration patterns across Wallace’s Line. In: Gower DJ, Richardson JE, Rosen BR, Rüber L, Williams ST (eds) Biotic evolution and environmental change in Southeast Asia. Cambridge University Press, Cambridge, pp 138–63

  • Ricklefs RE, Cox GW (1978) Stage of taxon cycle, habitat distribution, and population density in the avifauna of the West Indies. Am Nat 112:875–895

    Article  Google Scholar 

  • Rögl F (1998) Paleogeographic Considerations for Mediterranean and Paratethys seaways (Oligocene and Miocene). Ann Naturhist Mus Wien 99A:279–331

    Google Scholar 

  • Rögl F (1999) Mediterranean and Paratethys. Facts and hypotheses of an Oligocene to Miocene paleogeography (short overview). Geol Carpath 50(4):339–349

    Google Scholar 

  • Round PD, Hughes JB, Woodruff DS (2003) Latitudinal range limits of resident forest birds in Thailand and the Indochinese-Sundaic zoogeographic transition. Nat Hist Bull Siam Soc 51:69–96

    Google Scholar 

  • Ruedi M (1996) Phylogenetic evolution and biogeography of Southeast Asian shrews (genus Crocidura: Soricidae). Biol J Linn Soc 58:197–219

    Google Scholar 

  • Ryan JRJ, Esa YB (2006) Phylogenetic analysis of Hampala fishes (Subfamily Cyprininae) in Malaysia inferred from partial mitochondrial Cytochrome b DNA sequences. Zool Sci 23:893–901

    Article  PubMed  CAS  Google Scholar 

  • Samonds KE, Godfrey LR, Ali JR, Goodman SM, Vences M, Sutherland MR, Irwin MT, Krause DW (2012) Spatial and temporal arrival patterns of Madagascar’s vertebrate fauna explained by distance, ocean currents, and ancestor type. Proc Natl Acad Sci USA 109:5352–5357

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Schweizer M, Seehausen O, Güntert M, Hertwig ST (2010) The evolutionary diversification of parrots supports a taxon pulse model with multiple trans-oceanic dispersal events and local radiations. Mol Phylogenet Evol 54:984–994

    Article  PubMed  Google Scholar 

  • Sheldon FH, Moyle RG, Kennard J (2001) Ornithology of Sabah: history, gazetteer, annotated checklist, and bibliography. Ornithol Monogr 52:1–285

    Google Scholar 

  • Sheldon FH, Lim HC, Nais J, Lakim M, Tuuga A, Malim P, Majuakim J, Lo A, Schilthuizen M, Hosner PA, Moyle RG (2009a) Observations on the ecology, distribution, and biogeography of forest birds in Sabah, Malaysia. Raffles Bull Zool 57:577–586

    Google Scholar 

  • Sheldon FH, Lohman DJ, Lim HC, Zou F, Goodman SM, Prawiradilaga DM, Winker K, Braile TM, Moyle RG (2009b) Phylogeography of the magpie-robin species complex (Aves: Turdidae: Copsychus) reveals a Philippine species, an interesting isolating barrier, and unusual dispersal patterns in the Indian Ocean and Southeast Asia. J Biogeogr 36:1070–1083

    Article  Google Scholar 

  • Sheldon FH, Oliveros CH, Taylor SS, McKay B, Lim HC, Rahman MA, Mays H, Moyle RG (2012) Molecular phylogeny and insular biogeography of the lowland tailorbirds of Southeast Asia (Cisticolidae: Orthotomus). Mol Phylogenet Evol 65:54–63

    Article  PubMed  Google Scholar 

  • Siler CD, Oaks JR, Welton LJ, Linkem CW, Swab JC, Diesmos AC, Brown RM (2012) Did geckos ride the Palawan raft to the Philippines? J Biogeogr 39:1217–1234

    Article  Google Scholar 

  • Slik JWF, Raes N, Aiba SI, Brearley FQ, Cannon CH, Meijaard E, Nagamasu H, Nilus R, Paoli G, Poulsen AD, Sheil D, Suzuki E, van Valkenburg J, Webb CO, Wilkie P, Wulffraat S (2009) Environmental correlates for tropical tree diversity and distribution patterns in Borneo. Divers Distrib 15:523–532

    Article  Google Scholar 

  • Smythies BE (1999) The Birds of Borneo, 4th edn. Natural History Publications (Borneo), Kota Kinabalu

    Google Scholar 

  • Sorenson MD, Payne RB (2005) A molecular genetic analysis of cuckoo phylogeny. In: Payne RB (ed) The Cuckoos. Oxford University Press, Oxford, pp 68–94

    Google Scholar 

  • Stein RW (2013) Multistage scenerios for the evolution of polymorphisms in birds. PhD thesis. Department of Biological Sciences. Simon Fraser University, Burnaby

  • Steiper ME (2006) Population history, biogeography, and taxonomy of orangutans (Genus: Pongo) based on a population genetic meta-analysis of multiple loci. J Hum Evol 50:509–522

    Article  PubMed  Google Scholar 

  • Stelbrink B, Albrecht C, Hall R, von Rintelen T (2012) The biogeography of Sulawesi revisited: is there evidence for a vicariant origin of taxa on Wallace’s “anomalous island”? Evolution 66:2252–2271

    Article  PubMed  Google Scholar 

  • Stuijts IM (1993) Late Pleistocene and Holocene vegetation of West Java, Indonesia. Mod Quat Res Southeast Asia Southeast Asia 12:1–173

    Google Scholar 

  • Stuijts I, Newsome J, Flenley J (1988) Evidence for late Quaternary vegetational change in the Sumatran and Javan highlands. Rev Palaeobot Palynol 55:207–216

    Article  Google Scholar 

  • Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT (2014) The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach. Proc R Soc B Biol Sci 281:20140823

    Article  Google Scholar 

  • van den Bergh GD, de Vos J, Sondaar PY (2001) The Late Quaternary palaeogeography of mammal evolution in the Indonesian Archipelago. Palaeogeogr Palaeoclimatol Palaeoecol 171:385–408

    Article  Google Scholar 

  • van Steenis C (1950) The delimitation of Malaysia and its main plant geographical divisions. Flora Malesiana 4:70–75

  • van Tuinen M (2009) Birds (Aves). In: Hedges SB, Kumar S (eds) The timetree of life. Oxford University Press, New York, pp 409–411

    Google Scholar 

  • Viseshakul N, Charoennitikul W, Kitamura S, Kemp A, Thong-Aree S, Surapunpitak Y, Poonswad P, Ponglikitmongkol M (2011) A phylogeny of frugivorous hornbills linked to the evolution of Indian plants within Asian rainforests. J Evol Biol 24:1533–1545

    Article  PubMed  CAS  Google Scholar 

  • Voelker G, Peñalba JV, Huntley JW, Bowie RC (2014) Diversification in an Afro-Asian songbird clade (Erythropygia-Copsychus) reveals founder-event speciation via trans-oceanic dispersals and a southern to northern colonization pattern in Africa. Mol Phylogenet Evol 73:97–105

    Article  PubMed  Google Scholar 

  • Voris HK (2000) Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. J Biogeogr 27:1153–1167

    Article  Google Scholar 

  • Wallace AR (1876) The geographical distribution of animals. McMillan, London

    Google Scholar 

  • Wallace AR (1883) The Malay Archipelago. Macmillan, London

    Google Scholar 

  • Wang N, Kimball RT, Braun EL, Liang B, Zhang Z (2013) Assessing phylogenetic relationships among Galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae. PLoS One 8(5):e64312

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Wells DR (1999) The birds of the Thai-Malay Peninsula, vol 1: Non-passeries. Academic Press, New York

    Google Scholar 

  • Wells DR, Dickinson EC, Dekker RWRJ (2003) Systematic notes on Asian birds. 37. A preliminary review of the Chloropseidae and Irenidae. Zool Verh Leiden 344:25–42

    Google Scholar 

  • Whitmore TC (1981) Wallace’s line and plate tectonics. Oxford University Press, Oxford

    Google Scholar 

  • Whitmore TC (1987) Biogeographic evolution of the Malay archipelago. Clarendon Press, Oxford

    Google Scholar 

  • Whitten T, Soeriaatmadja RE, Afiff SA (1996) The ecology of Indonesia series, vol II. The Ecology of Java and Bali. Periplus, Hong Kong

  • Wilson RCL, Drury SA, Chapman DL (2000) The great Ice age: climate change and life. Routledge, London

    Google Scholar 

  • Wilting A, Sollmann R, Meijaard E, Helgen KM, Fickel J (2012) Mentawai’s endemic, relictual fauna: is it evidence for Pleistocene extinctions on Sumatra? J Biogeogr 39:1608–1620

    Article  Google Scholar 

  • Witts D, Hall R, Nichols G, Morley R (2012) A new depositional and provenance model for the Tanjung Formation, Barito Basin, SE Kalimantan, Indonesia. J Asian Earth Sci 56:77–104

    Article  Google Scholar 

  • Woodruff DS, Turner LM (2009) The Indochinese-Sundaic zoogeographic transition: a description and analysis of terrestrial mammal species distributions. J Biogeogr 36:803–821

    Article  Google Scholar 

  • Wright TF, Schirtzinger EE, Matsumoto T, Eberhard JR, Graves GR, Sanchez JJ, Capelli S, Müller H, Scharpegge J, Chambers GK (2008) A multilocus molecular phylogeny of the parrots (Psittaciformes): support for a Gondwanan origin during the Cretaceous. Mol Biol Evol 25:2141–2156

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Wurster CM, Bird MI (2014) Barriers and bridges: early human dispersals in equatorial SE Asia. In: Harff J, Bailey G, Lüth F (eds) Geology and archaeology: submerged landscapes of the continental shelf. Geological Society, London

    Google Scholar 

  • Wurster CM, Bird MI, Bull ID, Creed F, Bryant C, Dungait JAJ, Paz V (2010) Forest contraction in north equatorial Southeast Asia during the Last Glacial Period. Proc Natl Acad Sci USA 107:15508–15511

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Yapp CJ (2004) Fe(CO3)OH in goethite from a mid-latitude North American Oxisol: estimate of atmospheric CO2 concentration in the Early Eocene “climatic optimum”. Geochim Cosmochim Acta 68:935–947

    Article  CAS  Google Scholar 

  • Yumul GP, Dimalanta CB, Marquez EJ, Queaño KL (2009) Onland signatures of the Palawan microcontinental block and Philippine mobile belt collision and crustal growth process: a review. J Asian Earth Sci 34:610–623

    Article  Google Scholar 

  • Zachos J, Pagani M, Sloan L, Thomas E, Billups K (2001) Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292:686–693

    Article  PubMed  CAS  Google Scholar 

  • Zamoros LR, Matsuoka A (2004) Accretion and postaccretion tectonics of the Calamian Islands, North Palawan block, Philippines. Island Arc 13:506–619

    Article  Google Scholar 

  • Zamoros LR, Montes MGA, Queaño KL, Marquez EJ, Dimalanta CB, Gabo JAS, Yumul GP (2008) Buruanga peninsula and Antique Range: two contrasting terranes in Northwest Panay, Philippines featuring an arc-continent collision zone. Island Arc 17:443–457

    Article  Google Scholar 

  • Zhi L, Karesh W, Janczewski D, Frazier-Taylor H, Sajuthi D, Gombek F, Andau M, Martenson J, O’Brien S (1996) Genomic differentiation among natural populations of orang-utan (Pongo pygmaeus). Curr Biol 6:1326–1336

    Article  PubMed  CAS  Google Scholar 

  • Zhou L, Su YC, Thomas DC, Saunders RM (2012) ‘Out-of-Africa’dispersal of tropical floras during the Miocene climatic optimum: evidence from Uvaria (Annonaceae). J Biogeogr 39:322–335

    Article  Google Scholar 

Download references

Acknowledgments

We especially thank Franz Barlein, Erik Matthysen, David Winkler, and the International Ornithological Congress for inviting FHS to present a plenary lecture and write this paper. We also thank Robert Hall for providing his Cenozoic maps (Fig. 3) and for giving permission to use them, and JC Gonzalez and Will Stein for sending material from their PhD theses. We are extremely grateful for input from Ed Braun, Clare Brown, Ryan Burner, Vivien Chua, Geoff Davison, Dency Gawin, Jake Esselstyn, Kevin Johnson, Rebecca Kimball, John Mittermeier, Quentin Phillipps, Rick Prum, Mustafa Abdul Rahman, Mohamad Fizl Sidq Ramji, Roselyn Remsen, Van Remsen, Frank Rheindt, Subir Shakya, Mike Sorenson, Katie Stryjewski, and David Wells. This project has been supported by the Malaysian Chief Minister’s Department and numerous government departments in Sabah and Sarawak. Funding was provided by NSF DEB-0228688, NSF DEB-1241059, Coypu Foundation of Louisiana, National Geographic Society, Louisiana State University, American Museum of Natural History, University of Kansas, Sabah Parks, Sabah Museum, and the Universiti Malaysia Sarawak.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Frederick H. Sheldon.

Additional information

Communicated by E. Matthysen.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (PDF 393 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Sheldon, F.H., Lim, H.C. & Moyle, R.G. Return to the Malay Archipelago: the biogeography of Sundaic rainforest birds. J Ornithol 156 (Suppl 1), 91–113 (2015). https://doi.org/10.1007/s10336-015-1188-3

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10336-015-1188-3

Keywords

Navigation