Abstract
In this study, we report the molecular characterization of a novel mycovirus in a phytopathogenic fungus of the species Colletotrichum gloeosporioides, which we named “Colletotrichum gloeosporioides RNA virus 1” (CgRV1). The virus has a dsRNA genome of 2,975 bp and possesses two non-overlapping open reading frames (ORFs 1 and 2). The smaller ORF1 encodes a protein of unknown function, and the larger ORF2 encodes the RNA-dependent RNA polymerase (RdRp). Phylogenetic analysis based on the RdRp sequence showed that CgRV1 clustered with and is closely related to unclassified mycoviruses that are distinct from members of the family Partitiviridae.
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References
Ghabrial SA, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384
Ghabrial SA, Castón JR, Jiang D, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479:356–368
Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol 52:45–68
Nuss DL (1992) Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis. Microbiol Rev 56:561–576
Kanhayuwa L, Kotta-Loizou I, Özkan S, Gunning AP, Coutts RH (2015) A novel mycovirus from Aspergillus fumigatus contains four unique dsRNAs as its genome and is infectious as dsRNA. Proc Natl Acad Sci USA 112:9100–9105
Cannon PF, Damm U, Johnston PR, Weir BS (2012) Colletotrichum–current status and future directions. Stud Mycol 73:181–213
Garnsey SM, Timmer LW, Whiteside JO (1988) Compendium of citrus diseases (No. 634.3 C737c). APS Press, St. Paul
Igueirêdo LCD, Figueirêdo GSD, Giancoli ÁC, Tanaka FA, da Silva LA, Kitajima EW, Azevedo JL (2012) Detection of isometric, dsRNA-containing viral particles in Colletotrichum gloeosporioides isolated from cashew tree. Trop Plant Pathol 37:142–145
Zhong J, Pang X, Zhu H, Gao B, Huang W, Zhou Q (2016) Molecular characterization of a trisegmented mycovirus from the plant pathogenic fungus Colletotrichum gloeosporioides. Viruses 8:268
Marzano SYL, Nelson BD, Ajayi-Oyetunde O, Bradley CA, Hughes TJ, Hartman GL, Eastburn DM, Domier LL (2016) Identification of diverse mycoviruses through metatranscriptomics characterization of the viromes of five major fungal plant pathogens. J Virol 90:6846–6863
Rosseto P, Costa AT, Polonio JC, da Silva AA, Pamphile JA, Azevedo JL (2016) Investigation of mycoviruses in endophytic and phytopathogenic strains of Colletotrichum from different hosts. Genet Mol Res 15:15017651
Campo S, Gilbert KB, Carrington JC (2016) Small RNA-based antiviral defense in the phytopathogenic fungus Colletotrichum higginsianum. PLoS Pathog 12:e1005640
Jia H, Dong K, Zhou L, Wang G, Hong N, Jiang D, Xu W (2017) A dsRNA virus with filamentous viral particles. Nat Commun 8:168
Zhai L, Zhang M, Hong N, Xiao F, Fu M, Xiang J, Wang G (2018) Identification and characterization of a novel hepta-segmented dsRNA virus from the phytopathogenic fungus Colletotrichum fructicola. Front Microbiol 9:754
Morris TJ, Dodds JA (1979) Isolation and analysis of double stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858
Zhong J, Lei XH, Zhu JZ, Song G, Zhang YD, Chen Y, Gao BD (2014) Detection and sequence analysis of two novel co-infecting double-strand RNA mycoviruses in Ustilaginoidea virens. Arch Virol 159:3063–307019
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
Koloniuk I, Hrabáková L, Petrzik K (2015) Molecular characterization of a novel amalgavirus from the entomopathogenic fungus Beauveria bassiana. Arch Virol 160:1585–1588
Gilbert K, Holcomb E E, Allscheid R L, Carrington J (2019) Discovery of new mycoviral genomes within publicly available fungal transcriptomic datasets. BioRxiv 510404
Kotta-Loizou I, Sipkova J, Coutts RH (2015) Identification and sequence determination of a novel double-stranded RNA mycovirus from the entomopathogenic fungus Beauveria bassiana. Arch Virol 160:873–875
Zhu HJ, Chen D, Zhong J, Zhang SY, Da Gao B (2015) A novel mycovirus identified from the rice false smut fungus Ustilaginoidea virens. Virus genes 51:159–162
Acknowledgements
This study was supported by the Youth Foundation of Hunan Educational Committee (grant no. 17B128), the Natural Science Foundation of Hunan Province, China (grant No. 2018JJ3229), and the Hunan Innovation Platform Open Fund Project (17K046).
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Wang, Y., Liu, S., Zhu, H.J. et al. Molecular characterization of a novel mycovirus from the plant pathogenic fungus Colletotrichum gloeosporioides. Arch Virol 164, 2859–2863 (2019). https://doi.org/10.1007/s00705-019-04354-2
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DOI: https://doi.org/10.1007/s00705-019-04354-2