Abstract
Key message
The overexpression of CsBCATs promotes flowering in Arabidopsis by regulating the expression of flowering time genes.
Abstract
The branched-chain amino acid transferases (BCATs) play an important role in the metabolism of branched-chain amino acids (BCAAs), such as isoleucine, leucine, and valine. They function in both the synthesis and the degradation of this class of amino acids. We identified and characterized the three BCAT genes in cucumber (Cucumis sativus L.). The tissue-specific expression profiling in cucumber plants revealed that CsBCAT2 and CsBCAT7 were highly expressed in the reproductive tissues, whereas CsBCAT3 expression was highly detected in the vegetative tissues. The subcellular localization patterns of three CsBCATs were observed in the mitochondria. The functional analyses of CsBCATs showed that CsBCAT2 and CsBCAT3 restored the growth of bat1Δ/bat2Δ double knockout yeast (Saccharomyces cerevisiae), and CsBCAT3 and CsBCAT7 with different substrate preferences acted in a reverse reaction. The transgenic approach demonstrated that the overexpression of the three CsBCATs resulted in early flowering phenotypes, which were associated with the upregulation of FLOWERING LOCUS T (FT) and SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 (SOC1) in a manner in which they were dependent on GIGANTEA (GI)/CONSTANS (CO) and SHORT VEGETATIVE PHASE (SVP)/FLOWERING LOCUS C (FLC) modules. Our results, which are observed in conjunction, suggest that there is an interconnection between BCAT genes that function in BCAA metabolism and the flowering time in plants.
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Abbreviations
- BCAA:
-
Branched-chain amino acid
- BCAT:
-
Branched-chain aminotransferase
- CO:
-
CONSTANS
- FLC:
-
FLOWERING LOCUS C
- FT:
-
FLOWERING LOCUS T
- GI:
-
GIGANTEA
- SVP:
-
SHORT VEGETATIVE PHASE
- SOC1:
-
SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1
References
Arabidopsis Genome I (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796–815
Araujo WL, Ishizaki K, Nunes-Nesi A, Larson TR, Tohge T, Krahnert I, Witt S, Obata T, Schauer N et al (2010) Identification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondria. Plant Cell 22:1549–1563
Bai SL, Peng YB, Cui JX, Gu HT, Xu LY, Li YQ, Xu ZH, Bai SN (2004) Developmental analyses reveal early arrests of the spore-bearing parts of reproductive organs in unisexual flowers of cucumber (Cucumis sativus L.). Planta 220:230–240
Beck HC, Hansen AM, Lauritsen FR (2004) Catabolism of leucine to branched-chain fatty acids in Staphylococcus xylosus. J Appl Microbiol 96:1185–1193
Binder S, Knill T, Schuster J (2007) Branched-chain amino acid metabolism in higher plants. Physiol Plant 129:68–78
Boss PK, Bastow RM, Mylne JS, Dean C (2004) Multiple pathways in the decision to flower: enabling, promoting, and resetting. Plant Cell 16(Suppl 1):S18–S31
Chen H, Saksa K, Zhao F, Qiu J, Xiong L (2010) Genetic analysis of pathway regulation for enhancing branched-chain amino acid biosynthesis in plants. Plant J 63:573–583
Colon M, Hernandez F, Lopez K, Quezada H, Gonzalez J, Lopez G, Aranda C, Gonzalez A (2011) Saccharomyces cerevisiae Bat1 and Bat2 aminotransferases have functionally diverged from the ancestral-like Kluyveromyces lactis orthologous enzyme. PLoS One 6:e16099
Daschner K, Thalheim C, Guha C, Brennicke A, Binder S (1999) In plants a putative isovaleryl-CoA-dehydrogenase is located in mitochondria. Plant Mol Biol 39:1275–1282
Diebold R, Schuster J, Daschner K, Binder S (2002) The branched-chain amino acid transaminase gene family in Arabidopsis encodes plastid and mitochondrial proteins. Plant Physiol 129:540–550
Emanuelsson O, Nielsen H, von Heijne G (1999) ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci 8:978–984
Emanuelsson O, Nielsen H, Brunak S, von Heijne G (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300:1005–1016
Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2:953–971
Feng P, Guo H, Chi W, Chai X, Sun X, Xu X, Ma J, Rochaix JD, Leister D et al (2016) Chloroplast retrograde signal regulates flowering. Proc Natl Acad Sci USA 113:10708–10713
Gao F, Wang C, Wei C, Li Y (2009) A branched-chain aminotransferase may regulate hormone levels by affecting KNOX genes in plants. Planta 230:611–623
Gonda I, Bar E, Portnoy V, Lev S, Burger J, Schaffer AA, Tadmor Y, Gepstein S, Giovannoni JJ et al (2010) Branched-chain and aromatic amino acid catabolism into aroma volatiles in Cucumis melo L. fruit. J Exp Bot 61:1111–1123
Gu L, Jones AD, Last RL (2010) Broad connections in the Arabidopsis seed metabolic network revealed by metabolite profiling of an amino acid catabolism mutant. Plant J 61:579–590
Hildebrandt TM, Nesi AN, Araujo WL, Braun HP (2015) Amino acid catabolism in plants. Mol Plant 8:1563–1579
Hong SM, Bahn SC, Lyu A, Jung HS, Ahn JH (2010) Identification and testing of superior reference genes for a starting pool of transcript normalization in Arabidopsis. Plant Cell Physiol 51:1694–1706
Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, Lucas WJ, Wang X, Xie B et al (2009) The genome of the cucumber, Cucumis sativus L. Nat Genet 41:1275–1281
Hwang YH, Kim SK, Lee KC, Chung YS, Lee JH, Kim JK (2016) Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep 35:857–865
Ji H, Zhu Y, Tian S, Xu M, Tian Y, Li L, Wang H, Hu L, Ji Y et al (2014) Downregulation of leaf flavin content induces early flowering and photoperiod gene expression in Arabidopsis. BMC Plant Biol 14:237
Jin JB, Bae H, Kim SJ, Jin YH, Goh CH, Kim DH, Lee YJ, Tse YC, Jiang L et al (2003) The Arabidopsis dynamin-like proteins ADL1C and ADL1E play a critical role in mitochondrial morphogenesis. Plant Cell 15:2357–2369
Joshi V, Joung JG, Fei Z, Jander G (2010) Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress. Amino Acids 39:933–947
Kandra G, Severson R, Wagner GJ (1990) Modified branched-chain amino acid pathways give rise to acyl acids of sucrose esters exuded from tobacco leaf trichomes. Eur J Biochem 188:385–391
Kazan K, Lyons R (2016) The link between flowering time and stress tolerance. J Exp Bot 67:47–60
Knill T, Schuster J, Reichelt M, Gershenzon J, Binder S (2008) Arabidopsis branched-chain aminotransferase 3 functions in both amino acid and glucosinolate biosynthesis. Plant Physiol 146:1028–1039
Kochevenko A, Klee HJ, Fernie AR, Araujo WL (2012) Molecular identification of a further branched-chain aminotransferase 7 (BCAT7) in tomato plants. J Plant Physiol 169:437–443
Kohlhaw GB (2003) Leucine biosynthesis in fungi: entering metabolism through the back door. Microbiol Mol Biol Rev 67:1–15 (table of contents)
Kroumova AB, Xie Z, Wagner GJ (1994) A pathway for the biosynthesis of straight and branched, odd- and even-length, medium-chain fatty acids in plants. Proc Natl Acad Sci USA 91:11437–11441
Lee JH, Yoo SJ, Park SH, Hwang I, Lee JS, Ahn JH (2007) Role of SVP in the control of flowering time by ambient temperature in Arabidopsis. Genes Dev 21:397–402
Lee JH, Ryu HS, Chung KS, Pose D, Kim S, Schmid M, Ahn JH (2013) Regulation of temperature-responsive flowering by MADS-box transcription factor repressors. Science 342:628–632
Lee JH, Jin S, Kim SY, Kim W, Ahn JH (2017) A fast, efficient chromatin immunoprecipitation method for studying protein-DNA binding in Arabidopsis mesophyll protoplasts. Plant Methods 13:42
Li L, Thipyapong P, Breeden DC, Steffens JC (2003) Overexpression of a bacterial branched-chain alpha-keto acid dehydrogenase complex in Arabidopsis results in accumulation of branched-chain acyl-CoAs and alteration of free amino acid composition in seeds. Plant Sci 165:1213–1219
Liepman AH, Olsen LI (2004) Genomic analysis of aminotransferases in Arabidopsis thaliana. Crit Rev Plant Sci 23:73–89
Maloney GS, Kochevenko A, Tieman DM, Tohge T, Krieger U, Zamir D, Taylor MG, Fernie AR, Klee HJ (2010) Characterization of the branched-chain amino acid aminotransferase enzyme family in tomato. Plant Physiol 153:925–936
Nambara E, Kawaide H, Kamiya Y, Naito S (1998) Characterization of an Arabidopsis thaliana mutant that has a defect in ABA accumulation: ABA-dependent and ABA-independent accumulation of free amino acids during dehydration. Plant Cell Physiol 39:853–858
Okada K, Hirotsu K, Sato M, Hayashi H, Kagamiyama H (1997) Three-dimensional structure of Escherichia coli branched-chain amino acid aminotransferase at 2.5 A resolution. J Biochem 121:637–641
Prohl C, Kispal G, Lill R (2000) Branched-chain-amino-acid transaminases of yeast Saccharomyces cerevisiae. Methods Enzymol 324:365–375
Riboni M, Galbiati M, Tonelli C, Conti L (2013) GIGANTEA enables drought escape response via abscisic acid-dependent activation of the florigens and SUPPRESSOR OF OVEREXPRESSION OF CONSTANS. Plant Physiol 162:1706–1719
Riboni M, Robustelli Test A, Galbiati M, Tonelli C, Conti L (2016) ABA-dependent control of GIGANTEA signalling enables drought escape via up-regulation of FLOWERING LOCUS T in Arabidopsis thaliana. J Exp Bot 67:6309–6322
Schuster J, Binder S (2005) The mitochondrial branched-chain aminotransferase (AtBCAT-1) is capable to initiate degradation of leucine, isoleucine and valine in almost all tissues in Arabidopsis thaliana. Plant Mol Biol 57:241–254
Schuster J, Knill T, Reichelt M, Gershenzon J, Binder S (2010) BRANCHED-CHAIN AMINOTRASFERASE4 is part of the chain elongation pathway in the biosynthesis of methionine-derived glucosinates in Arabidopsis. Plant Cell 18:2664–2679
Singh BK, Shaner DL (1995) Biosynthesis of branched chain amino acids: from test tube to field. Plant Cell 7:935–944
Tomato Genome C (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485:635–641
Walters DS, Steffens JC (1990) Branched-chain amino acid metabolism in the biosynthesis of Lycopersicon pennellii glucose esters. Plant Physiol 93:1544–1551
Warzybok A, Migocka M (2013) Reliable reference genes for normalization of gene expression in cucumber grown under different nitrogen nutrition. PLoS One 8:e72887
Weigel D, Glazebrook J (2002) Arabidopsis: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
Win KT, Zhang C, Song K, Lee JH, Lee S (2015) Development and characterization of a co-dominant molecular marker via sequence analysis of a genomic region containing the female (F) locus in cucumber (Cucumis sativus L.). Mol Breed 35:229
Yennawar N, Dunbar J, Conway M, Hutson S, Farber G (2001) The structure of human mitochondrial branched-chain aminotransferase. Acta Crystallogr D Biol Crystallogr 57:506–515
Acknowledgements
This work was supported by Grants from the National Research Foundation of Korea, and the Next-Generation BioGreen 21 Program (Plant Molecular Breeding Center no. PJ01329601) of the Rural Development Administration, Republic of Korea.
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Communicated by Jeong Sheop Shin.
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Lee, J.H., Kim, YC., Jung, Y. et al. The overexpression of cucumber (Cucumis sativus L.) genes that encode the branched-chain amino acid transferase modulate flowering time in Arabidopsis thaliana. Plant Cell Rep 38, 25–35 (2019). https://doi.org/10.1007/s00299-018-2346-x
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DOI: https://doi.org/10.1007/s00299-018-2346-x