Abstract
A novel chemolithoautotrophic bacterium, strain H1576T, was isolated from water of a brackish lake. Strain H1576T grew aerobically on inorganic sulfur compounds. Hydrogen gas did not support autotrophic growth, and heterotrophic growth was not observed. Cells were rod shaped, motile, 1.5–2.7 μm in length and 0.6–0.7 μm in width. Growth was observed at 3–22 °C with an optimum growth temperature of 13–15 °C. The pH range for growth was 6.0–7.4 with an optimum pH of 6.6–6.8. Major fatty acids were summed feature 3 (C16: 1ω7c and/or C16: 1ω6c). The complete genome of strain H1576T consists of a circular chromosome and a plasmid, with total length of 2.8 Mbp and G+C content of 46.4 mol%. Phylogenetic analyses indicated that strain H1576T belongs to the genus Sulfurimonas but distinct from representatives of existing species. On the basis of genomic and phenotypic characteristics, a new species named Sulfurimonas aquatica sp. nov. is proposed with the type strain of strain H1576T (= BCRC 81254T = JCM 35004T).
Similar content being viewed by others
References
Cai L, Shao M-F, Zhang T (2014) Non-contiguous finished genome sequence and description of Sulfurimonas hongkongensis sp. nov., a strictly anaerobic denitrifying, hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from marine sediment. Stand Genomic Sci 9:1302–1310. https://doi.org/10.4056/sigs.4948668
Fu C, Li J, Lv X, Song W, Zhang X (2020) Operation performance and microbial community of sulfur-based autotrophic denitrification sludge with different sulfur sources. Environ Geochem Health 42:1009–1020. https://doi.org/10.1007/s10653-019-00482-5
Han Y, Perner M (2015) The globally widespread genus Sulfurimonas: versatile energy metabolisms and adaptations to redox clines. Front Microbiol 6:989. https://doi.org/10.3389/fmicb.2015.00989
Haosagul S, Oaew S, Prommeenate P, Sawasdee V, Boonyawanich S, Pisutpaisal N (2021) Profile of sulfur oxidizing bacteria in full-scale biotrickling filter to remove H2S in biogas from in cassava starch industry. Energy Rep 7:677–685. https://doi.org/10.1016/j.egyr.2021.07.086
Henkel JV, Vogts A, Werner J, Neu TR, Spröer C, Bunk B, Schulz-Vogt HN (2021) Candidatus Sulfurimonas marisnigri sp. nov. and Candidatus Sulfurimonas baltica sp. Nov., thiotrophic manganese oxide reducing chemolithoautotrophs of the class Campylobacteria isolated from the pelagic redoxclines of the Black Sea and the Baltic Sea. Syst Appl Microbiol 44:126155. https://doi.org/10.1016/j.syapm.2020.126155
Hu Q, Wang S, Lai Q, Shao Z, Jiang L (2021) Sulfurimonas indica sp. nov., a hydrogen-and sulfur-oxidizing chemolithoautotroph isolated from a hydrothermal sulfide chimney in the Northwest Indian Ocean. Int J Syst Evol Microb 71:004575. https://doi.org/10.1099/ijsem.0.004575
Inagaki F, Takai K, Kobayashi H, Nealson KH, Horikoshi K (2003) Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing ε-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 53:1801–1805. https://doi.org/10.1099/ijs.0.02682-0
Kubo K, Kojima H, Fukui M (2014) Vertical distribution of major sulfate-reducing bacteria in a shallow eutrophic meromictic lake. Syst Appl Microbiol 37:510–519. https://doi.org/10.1016/j.syapm.2014.05.008
Labrenz M, Grote J, Mammitzsch K, Boschker HT, Laue M, Jost G et al (2013) Sulfurimonas gotlandica sp. nov., a chemoautotrophic and psychrotolerant epsilonproteobacterium isolated from a pelagic redoxcline, and an emended description of the genus Sulfurimonas. Int J Syst Evol Microbiol 63:4141–4148. https://doi.org/10.1099/ijs.0.048827-0
Meier-Kolthoff JP, Göker M (2019) TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat Commun 10:2182. https://doi.org/10.1038/s41467-019-10210-3
Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A, Chaumeil PA, Hugenholtz P (2018) A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Nat Biotechnol 36:996–1004. https://doi.org/10.1038/nbt.4229
Parte AC, SardàCarbasse J, Meier-Kolthoff JP, Reimer LC, Göker M (2020) List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. Int J Syst Evol Microbiol 70:5607–5612. https://doi.org/10.1099/ijsem.0.004332
Ratnikova NM, Slobodkin AI, Merkel AY, Kopitsyn DS, Kevbrin VV, Bonch-Osmolovskaya EA, Slobodkina GB (2020) Sulfurimonas crateris sp. nov., a facultative anaerobic sulfur-oxidizing chemolithoautotrophic bacterium isolated from a terrestrial mud volcano. Int J Syst Evol Microbiol 70:487–492. https://doi.org/10.1099/ijsem.0.003779
Takai K, Suzuki MT, Nakagawa S, Miyazaki M, Suzuki Y, Inagaki F et al (2006) Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas. Int J Syst Evol Microbiol 56:1725–1733. https://doi.org/10.1099/ijs.0.64255-0
Tamura K, Stecher G, Kumar S (2021) MEGA11: molecular evolutionary genetics analysis version 11. Mol Biol Evol 38:3022–3027. https://doi.org/10.1093/molbev/msab120
Timmer-Ten Hoor A (1975) A new type of thiosulphate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov. Neth J Sea Res 9:344–350. https://doi.org/10.1016/0077-7579(75)90008-3
Wang S, Jiang L, Liu X, Yang S, Shao Z (2020) Sulfurimonas xiamenensis sp. nov. and Sulfurimonas lithotrophica sp. nov., hydrogen and sulfur-oxidizing chemolithoautotrophs within the Epsilonproteobacteria isolated from coastal sediments, and an emended description of the genus. Int J Syst Evol Microbiol 70:2657–2663. https://doi.org/10.1099/ijsem.0.004087
Wang S, Jiang L, Hu Q, Cui L, Zhu B, Fu X, Lai Q, Shao Z, Yang S (2021a) Characterization of Sulfurimonas hydrogeniphila sp. Nov., a novel bacterium predominant in deep-sea hydrothermal vents and comparative genomic analyses of the genus Sulfurimonas. Front Microbiol 12:626705. https://doi.org/10.3389/fmicb.2021a.626705
Wang S, Shao Z, Lai Q, Liu X, Xie S, Jiang L, Yang S (2021b) Sulfurimonas sediminis sp. nov., a novel hydrogen-and sulfur-oxidizing chemolithoautotroph isolated from a hydrothermal vent at the Longqi system, southwestern Indian ocean. Antonie Van Leeuwenhoek 114:813–822. https://doi.org/10.1007/s10482-021-01560-4
Watanabe T, Kubo K, Kamei Y, Kojima H, Fukui M (2022) Dissimilatory microbial sulfur and methane metabolism in the water column of a shallow meromictic lake. Syst Appl Microbiol 45:126320. https://doi.org/10.1016/j.syapm.2022.126320
Widdel F, Bak F (1992) Gram-negative mesophilic sulfate-reducing bacteria. The prokaryotes, vol 4, 2nd edn. Springer, New York, pp 3352–3378
Wu J, Jiang X, Jin Z, Yang S, Zhang J (2020) The performance and microbial community in a slightly alkaline biotrickling filter for the removal of high concentration H2S from biogas. Chemosphere 249:126127. https://doi.org/10.1016/j.chemosphere.2020.126127
Yoon S-H, Ha S-M, Lim J, Kwon S, Chun J (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110:1281–1286. https://doi.org/10.1007/s10482-017-0844-4
Acknowledgements
This study was and supported by JSPS KAKENHI, Grant Number 15K07209. The authors have no relevant financial or non-financial interests to disclose. The water sample collection was performed with permission of the Agency of Cultural Affairs, Government of Japan.
Funding
This study was funded by JSPS KAKENHI, Grant Number 15K07209.
Author information
Authors and Affiliations
Contributions
MF conducted water sampling. HK, YK and TW performed experiments for phenotypic characterization. HK isolated the strain, conducted genome analysis, wrote manuscript and prepared figures. All authors reviewed the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare no competing interests.
Additional information
Communicated by Erko Stackebrandt.
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Kojima, H., Kato, Y., Watanabe, T. et al. Sulfurimonas aquatica sp. nov., a sulfur-oxidizing bacterium isolated from water of a brackish lake. Arch Microbiol 204, 559 (2022). https://doi.org/10.1007/s00203-022-03167-3
Received:
Revised:
Accepted:
Published:
DOI: https://doi.org/10.1007/s00203-022-03167-3