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Towards a unified genetic map for diploid roses

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Abstract

We have constructed the first integrated consensus map (ICM) for rose, based on the information of four diploid populations and more than 1,000 initial markers. The single population maps are linked via 59 bridge markers, on average 8.4 per linkage group (LG). The integrated map comprises 597 markers, 206 of which are sequence-based, distributed over a length of 530 cM on seven LGs. By using a larger effective population size and therefore higher marker density, the marker order in the ICM is more reliable than in the single population maps. This is supported by a more even marker distribution and a decrease in gap sizes in the consensus map as compared to the single population maps. This unified map establishes a standard nomenclature for rose LGs, and presents the location of important ornamental traits, such as self-incompatibility, black spot resistance (Rdr1), scent production and recurrent blooming. In total, the consensus map includes locations for 10 phenotypic single loci, QTLs for 7 different traits and 51 ESTs or gene-based molecular markers. This consensus map combines for the first time the information for traits with high relevance for rose variety development. It will serve as a tool for selective breeding and marker assisted selection. It will benefit future efforts of the rose community to sequence the whole rose genome and will be useful for synteny studies in the Rosaceae family and especially in the section Rosoideae.

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Acknowledgments

This study has been carried out in part with financial support from the Netherlands Ministry of Agriculture, Nature and Food Safety (KB-01) and from the Commission of the European Community [QLRT-2001-01278, Genetic evaluation of European rose resources for conservation and horticultural use (Generose)]. This study does not necessarily reflect the Commission’s views and in no way anticipates the Commission’s future policy in this area. Additionally the Basye Endowment for Rose Genetics and the TDA-BARD funded by the Texas-Israel Exchange Fund supported this work.

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Authors and Affiliations

  1. Institute for Plant Genetics, Leibniz University Hannover, Herrenhaeuser Str. 2, 30419, Hannover, Germany

    Monika Spiller, Marcus Linde & Thomas Debener

  2. INRA, IFR 149 Quasav, UMR 1259 GenHort, 49071, Beaucouzé, France

    Laurence Hibrand-Saint Oyant & Fabrice Foucher

  3. Prunus and Rosa Breeding and Genetics, Department of Horticultural Sciences, Texas A&M University, College Station, TX, 77843-2133, USA

    Ching-Jung Tsai & David H. Byrne

  4. Plant Research International, Wageningen UR Plant Breeding, P.O. Box 16, 6700 AA, Wageningen, The Netherlands

    Marinus J. M. Smulders

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  1. Monika Spiller
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  2. Marcus Linde
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  3. Laurence Hibrand-Saint Oyant
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  4. Ching-Jung Tsai
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  5. David H. Byrne
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  6. Marinus J. M. Smulders
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  7. Fabrice Foucher
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  8. Thomas Debener
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Correspondence to Marcus Linde.

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Communicated by H. Nybom.

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Spiller, M., Linde, M., Hibrand-Saint Oyant, L. et al. Towards a unified genetic map for diploid roses. Theor Appl Genet 122, 489–500 (2011). https://doi.org/10.1007/s00122-010-1463-x

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