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Refined examination of plant metaphase chromosome structure at different levels made feasible by new isolation methods

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Abstract

Two methods for isolation of plant metaphase chromosomes are described. The first, micromanipulation, allows the isolation of a number of individual chromosomes, which may be used as templates for the generation of chromosome specific DNA libraries and for physical sequence mapping by the polymerase chain reaction (PCR). The second provides, from synchronized meristems, pure chromosome suspensions suitable for flow cytometric analysis and chromosome sorting. Restriction endonuclease banding, immunostaining of chromosomal antigens, as well as fluorescence in situ hybridization at high signal to noise ratio were successfully performed on the isolated chromosomes. Chromosomes obtained by both protocols were suitable for scanning electron microscopy, the methods should also prove useful for refined analyses of the karyotypes of other plant species.

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References

  • Adolph KW, Kreismann LR (1983) Relationship of the surface structure of metaphase chromosomes to the higher order organization of chromatin fibers. Scanning Electron Microsc II:869–877

    Google Scholar 

  • Allen TD, Jack EM, Harrison CJ, Claugher D, Harris R (1986) Human metaphase chromosome preparation for scanning electron microscopy — a consideration of inherent problems. In: O'Hare K (ed) The science of biological specimen preparations, microscopy and microanalysis. Scanning Electron Microscopy. AMP, Chicago, Illinois, pp 299–307

    Google Scholar 

  • Ambros PF, Matzke MA, Matzke AJM (1986) Detection of a 17 kb unique sequence (T-DNA) in plant chromosomes by in situ hybridization. Chromosoma 94:11–18

    Google Scholar 

  • Arumuganathan K, Slattery JP, Tanksley SD, Earle ED (1991) Preparation and flow cytometric analysis of metaphase chromosomes of tomato. Theor Appl Genet 82:101–111

    Google Scholar 

  • Blin N (1985) Molecular- und Cytogenetik sortierter Metaphase-chromosomen. In: Blin N, Trendelenburg MF, Schmidt ER (eds) Molekular- und Zellbiologie. Springer-Verlag, Berlin, pp 123–131

    Google Scholar 

  • Conia J, Bergouinoux C, Perennes C, Muller P, Brown S, Gadal P (1987) Flow cytometric analysis and sorting of plant chromosomes from Petunia hybrida protoplasts. Cytometry 8:500–508

    Google Scholar 

  • Conia J, Muller P, Brown S, Bergounioux C, Gadal P (1989) Monoparametric models of flow cytometric karyotypes with spreadsheet software. Theor Appl Genet 77:295–303

    Google Scholar 

  • de Laat AMM, Blaas J (1984) Flow-cytometric characterization and sorting of plant chromosomes. Theor Appl Genet 67:463–467

    Google Scholar 

  • de Laat AMM, Schel JHN (1986) The integrity of metaphase chromosomes of Haplopappus gracilis (Nutt.) Gray isolated by flow cytometry. Plant Sci 47:145–151

    Google Scholar 

  • Döbel P, Schubert I, Rieger R (1978) Distribution of heterochromatin in a reconstructed karyotype of Vicia faba as identified by banding- and DNA-late replication patterns. Chromosoma 69:193–209

    Google Scholar 

  • Dolezel J, Binarová P, Lucretti S (1989) Analysis of nuclear DNA content in plant cells by flow cytometry. Biol Plant 31:113–120

    Google Scholar 

  • Edström J-E, Kaiser R, Röhme D (1987) Microcloning of mammalian metaphase chromosomes. Methods Enzymol 151:503–516

    Google Scholar 

  • Gamborg OL, Wetter LR (1975) Plant tissue culture methods. NRCC Prairie Regional Laboratory, Saskatoon, p 92

    Google Scholar 

  • Geber G, Schweizer D (1988) Cytochemical heterochromatin differentiation in Sinapis alba (Cruciferae) using a simple airdrying technique for producing chromosome spreads. Plant Syst Evol 158:97–106

    Google Scholar 

  • Gray JW, Cram LS (1990) Flow karyotyping and chromosome sorting. In: Melamed MR, Lindmo T, Mendelsohn ML (eds) Flow cytometry and sorting, 2nd edn. Wiley-Liss, Chichester, pp 503–529

    Google Scholar 

  • Griesbach RJ, Malmberg RL, Carlson PS (1982) An improved technique for the isolation of higher plant chromosomes. Plant Sci Lett 24:55–60

    Google Scholar 

  • Hadlaczky G, Bisztray G, Praznovszky T, Dudits D (1983) Mass isolation of plant chromosomes and nuclei. Planta 157:278–285

    Google Scholar 

  • Künzel G, Nicoloff H (1979) Further results on karyotype reconstruction in barley. Biol Zentralbl 98:587–592

    Google Scholar 

  • Lucretti S, Dolezel J, Fuchs J, Schubert I (1992) Flow karyotyping and sorting of Vicia faba chromosomes. Theor Appl Genet (in press)

  • Lüdecke H-J, Senger G, Claussen U, Horsthemke B (1989) Cloning defined regions of the human genome by microdissection of banded chromosomes and enzymatic amplification. Nature 338:348–350

    Google Scholar 

  • Matthews BF (1983) Isolation of mitotic chromosomes from partially synchronized carrot (D. carota) cell suspension cultures. Plant Sci Lett 31:165–172

    Google Scholar 

  • Meltzer PS, Guan X-Y, Burgess A, Trent JM (1992) Rapid generation of region specific probes by chromosome microdissection and their application. Nat Genet 1:24–28

    Google Scholar 

  • Mii M, Saxena PK, Fowke LC, King J (1987) Isolation of chromosomes from cell suspension cultures of Vicia hajastana. Cytologia 52:523–528

    Google Scholar 

  • Pinkel D, Straume T, Gray JW (1986) Cytogenetic analysis using quantitative, high sensitivity, fluorescence hybridization. Proc Natl Acad Sci USA 83:2934–2938

    Google Scholar 

  • Richards EJ, Ausubel FM (1988) Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell 53:127–136

    Google Scholar 

  • Scherthan H, Köhler M, Vogt P, von Malsch K, Schweizer D (1992) Chromosomal in situ hybridization with double-labeled DNA: signal amplification at the probe level. Cytogenet Cell Genet 60:4–7

    Google Scholar 

  • Schubert I (1991) FokI digestion of broad bean chromosomes causes a specific banding pattern. Biol Zentralbl 110:195–198

    Google Scholar 

  • Schubert I (1992) Telomeric polymorphism in Vicia faba. Biol Zentralbl 111:164–168

    Google Scholar 

  • Schubert I, Rieger R (1991) Catalogue of chromosomal and morphological mutants of Faba bean in the Gatersleben Collection, 1991. FABIS Newslett 28/29:14–22

    Google Scholar 

  • Schubert I, Rieger R, Michaelis A (1986) Structural and numerical manipulation of the Vicia faba karyotype: results and perspectives. Biol Zentralbl 105:9–17

    Google Scholar 

  • Schwarzacher T, Ambros P, Schweizer D (1980) Application of Giemsa banding to orchid karyotype analysis. Plant Syst Evol 134:293–297

    Google Scholar 

  • Szabados L, Hadlaczky G, Dudits D (1981) Uptake of isolated plant chromosomes by plant protoplasts. Planta 151: 141–145

    Google Scholar 

  • Trask B (1990) Chromosome isolation procedures. In: Gray JW (ed) Flow cytogenetics. Academic Press, London, pp 43–60

    Google Scholar 

  • Van Dilla MA, Deaven LL (1990) Construction of gene libraries for each human chromosome. Cytometry 11:208–218

    Google Scholar 

  • Wanner G, Formanek H, Martin R, Herrmann RG (1991) High resolution scanning electron microscopy of plant chromosomes. Chromosoma 100:103–109

    Google Scholar 

  • Yakura K, Kato A, Tanifuji S (1987) Cytological localization of highly repeated DNA sequences, the FokI sequence family and BamHI sequence families, in Vicia faba chromosomes. Jpn J Genet 62:325–332

    Google Scholar 

  • Yakura K, Tanifuji S (1983) Molecular cloning and restriction analysis of Eco RI-fragments of Vicia faba rDNA. Plant Cell Physiol 24:1327–1330

    Google Scholar 

  • Young BD (1990) Human chromosome analysis by flow cytometry. In: Gray JW (ed) Flow cytogenetics. Academic Press, London, pp 1–15

    Google Scholar 

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by D. Schweizer

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Schubert, I., Dolezel, J., Houben, A. et al. Refined examination of plant metaphase chromosome structure at different levels made feasible by new isolation methods. Chromosoma 102, 96–101 (1993). https://doi.org/10.1007/BF00356026

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  • DOI: https://doi.org/10.1007/BF00356026

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