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NMR Spectroscopy in Fragment Based Drug Design

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Lead-Seeking Approaches

Part of the book series: Topics in Medicinal Chemistry ((TMC,volume 5))

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Abstract

In this chapter we will briefly reiterate critical aspects of solution nuclear magnetic resonance (NMR) spectroscopy approaches and their applications in drug discovery. These approaches are essentially based on a number of NMR techniques that have been developed to monitor and characterize intermolecular interactions. By way of examples, we will illustrate the unique advantages that these techniques offer when employed in conjunction with fragment-based ligand design, especially when tackling challenging drug targets.

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References

  1. Pellecchia M, Sem DS, Wuthrich K (2002) Nat Rev Drug Discov 1:211

    Article  CAS  Google Scholar 

  2. Pellecchia M (2005) Chem Biol 12:961-971

    Google Scholar 

  3. Pellecchia M, Becattini B, Crowell KJ, Fattorusso R, Forino M, Fragai M, Jung D, Mustelin T, Tautz L (2004) Expert Opin Ther Targets 8:597

    Article  CAS  Google Scholar 

  4. Papeo G, Giordano P, Brasca MG, Buzzo F, Caronni D, Ciprandi F, Mongelli N, Veronesi M, Vulpetti A, Dalvit C (2007) J Am Chem Soc 129:5665

    Article  CAS  Google Scholar 

  5. Dalvit C, Ardini E, Flocco M, Fogliatto GP, Mongelli N, Veronesi M (2003) J Am Chem Soc 125:14620

    Article  CAS  Google Scholar 

  6. Hajduk PJ, Burns DJ (2002) Comb Chem High Throughput Screen 5:613

    Article  CAS  Google Scholar 

  7. Hajduk PJ, Greer J (2007) Nat Rev Drug Discov 6:211

    Article  CAS  Google Scholar 

  8. Jahnke W, Erlanson DA (2006) Fragment-based approaches in drug discovery. Wiley, New York

    Google Scholar 

  9. Valler MJ, Green D (2000) Drug Discov Today 5:286

    Article  CAS  Google Scholar 

  10. Vogtherr M, Saxena K, Hoelder S, Grimme S, Betz M, Schieborr U, Pescatore B, Robin M, Delarbre L, Langer T, Wendt KU, Schwalbe H (2006) Angew Chem Int Ed Engl 45:993

    Article  CAS  Google Scholar 

  11. Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Adv Drug Deliv Rev 46:3

    Article  CAS  Google Scholar 

  12. Lipinski CA (2003) Drug Discov Today 8:12

    Article  Google Scholar 

  13. Lipinski CA (2000) J Pharmacol Toxicol Methods 44:235

    Article  CAS  Google Scholar 

  14. Carr RA, Congreve M, Murray CW, Rees DC (2005) Drug Discov Today 10:987

    Article  CAS  Google Scholar 

  15. Congreve M, Carr R, Murray C, Jhoti H (2003) Drug Discov Today 8:876

    Article  Google Scholar 

  16. Erlanson DA, Hansen SK (2004) Curr Opin Chem Biol 8:399

    Article  CAS  Google Scholar 

  17. Erlanson DA, McDowell RS, O'Brien T (2004) J Med Chem 47:3463

    Article  CAS  Google Scholar 

  18. Erlanson DA, Wells JA, Braisted AC (2004) Annu Rev Biophys Biomol Struct 33:199

    Article  CAS  Google Scholar 

  19. Gill A, Cleasby A, Jhoti H (2005) Chembiochem 6:506

    Article  CAS  Google Scholar 

  20. Hartshorn MJ, Murray CW, Cleasby A, Frederickson M, Tickle IJ, Jhoti H (2005) J Med Chem 48:403

    Article  CAS  Google Scholar 

  21. Moore WR Jr (2005) Curr Opin Drug Discov Devel 8:355

    CAS  Google Scholar 

  22. Rees DC, Congreve M, Murray CW, Carr R (2004) Nat Rev Drug Discov 3:660

    Article  CAS  Google Scholar 

  23. Schade M, Oschkinat H (2005) Curr Opin Drug Discov Devel 8:365

    CAS  Google Scholar 

  24. Villar HO, Yan J, Hansen MR (2004) Curr Opin Chem Biol 8:387

    Article  CAS  Google Scholar 

  25. Zartler ER, Shapiro MJ (2005) Curr Opin Chem Biol 9:366

    Article  CAS  Google Scholar 

  26. Shuker SB, Hajduk PJ, Meadows RP, Fesik SW (1996) Science 274:1531

    Article  CAS  Google Scholar 

  27. Langer T, Vogtherr M, Elshorst B, Betz M, Schieborr U, Saxena K, Schwalbe H (2004) Chembiochem 5:1508

    Article  CAS  Google Scholar 

  28. Allen KN, Lavie A, Petsko GA, Ringe D (1995) Biochemistry 34:3742

    Article  CAS  Google Scholar 

  29. Rutenber E, Fauman EB, Keenan RJ, Fong S, Furth PS, Ortiz de Montellano PR, Meng E, Kuntz ID, DeCamp DL, Salto R et al. (1993) J Biol Chem 268:15343

    CAS  Google Scholar 

  30. Rutenber EE, McPhee F, Kaplan AP, Gallion SL, Hogan JC Jr, Craik CS, Stroud RM (1996) Bioorg Med Chem 4:1545

    Article  CAS  Google Scholar 

  31. Shoichet BK, Stroud RM, Santi DV, Kuntz ID, Perry KM (1993) Science 259:1445

    Article  CAS  Google Scholar 

  32. Verlinde CLMJ, Pijning T, Kalk KH, van Calenbergh S, Aershot AV, Herdewijn P, Callens M, Michels P, Opperdoes FR, Wierenga RK, Hol WGJ (1993) In: Testa B, Kyburz E, Fuhrer W, Giger R (eds) Perspectives in medicinal chemistry. Helvetica Chimica Acta, Basel, p 135

    Google Scholar 

  33. Bertini I, Del Bianco C, Gelis I, Katsaros N, Luchinat C, Parigi G, Peana M, Provenzani A, Zoroddu MA (2004) Proc Natl Acad Sci U S A 101:6841

    Article  CAS  Google Scholar 

  34. Hajduk PJ, Gerfin T, Boehlen JM, Haberli M, Marek D, Fesik SW (1999) J Med Chem 42:2315

    Article  CAS  Google Scholar 

  35. Jahnke W (2007) J Biomol NMR 39:87

    Article  CAS  Google Scholar 

  36. Kessler H, Klages J (2006) In: Triggle DJ, Taylor JB (eds) Comprehensive medicinal chemistry II, vol 3. Elsevier, Oxford, p 901

    Google Scholar 

  37. Klages J, Coles M, Kessler H (2006) In: Bartlett PA, Etzeroth M (eds) NMR-based screening in exploiting chemical diversity for drug discovery, vol 12. RSC, Cambridge, UK, p 263

    Google Scholar 

  38. Klages J, Coles M, Kessler H (2006) NMR-based screening. RSC, Cambridge, UK

    Google Scholar 

  39. Klages J, Coles M, Kessler H (2007) Analyst 132:693

    Article  CAS  Google Scholar 

  40. Coles M, Heller M, Kessler H (2003) Drug Discov Today 8:803

    Article  CAS  Google Scholar 

  41. Neumann T, Junker HD, Schmidt K, Sekul R (2007) Curr Top Med Chem 7:1630

    Article  CAS  Google Scholar 

  42. Fejzo J, Lepre CA, Peng JW, Bemis GW, Ajay, Murcko MA, Moore JM (1999) Chem Biol 6:755

    Article  CAS  Google Scholar 

  43. Kuntz ID, Chen K, Sharp KA, Kollman PA (1999) Proc Natl Acad Sci U S A 96:9997

    Article  CAS  Google Scholar 

  44. Hopkins AL, Groom CR, Alex A (2004) Drug Discov Today 9:430

    Article  Google Scholar 

  45. Cele AZ, Metz JT (2005) Drug Discov Today 10:464

    Article  Google Scholar 

  46. Hajduk PJ (2006) J Med Chem 49:6972

    Article  CAS  Google Scholar 

  47. Hajduk PJ, Sheppard G, Nettesheim DG, Olejniczak ET, Shuker SB, Meadows RP, Steinman DH, Carrera GM, Marcotte PA, Severin J, Walter K, Smith H, Gubbins E, Simmer R, Holzman TF, Morgan DW, Davidsen SK, Summers JB, Fesik SW (1997) J Am Chem Soc 119:5818

    Article  CAS  Google Scholar 

  48. Rega MF, Leone M, Jung D, Cotton NJ, Stebbins JL, Pellecchia M (2007) Bioorg Chem 35:344

    Article  CAS  Google Scholar 

  49. Pervushin K, Riek R, Wider G, Wuthrich K (1997) Proc Natl Acad Sci U S A 94:12366

    Article  CAS  Google Scholar 

  50. Pellecchia M, Meininger D, Dong Q, Chang E, Jack R, Sem DS (2002) J Biomol NMR 22:165

    Article  CAS  Google Scholar 

  51. Wyss DF, McCoy MA, Senior MM (2002) Curr Opin Drug Discov Devel 5:630

    CAS  Google Scholar 

  52. Oltersdorf T, Elmore SW, Shoemaker AR, Armstrong RC, Augeri DJ, Belli BA, Bruncko M, Deckwerth TL, Dinges J, Hajduk PJ, Joseph MK, Kitada S, Korsmeyer SJ, Kunzer AR, Letai A, Li C, Mitten MJ, Nettesheim DG, Ng S, Nimmer PM, O'Connor JM, Oleksijew A, Petros AM, Reed JC, Shen W, Tahir SK, Thompson CB, Tomaselli KJ, Wang B, Wendt MD, Zhang H, Fesik SW, Rosenberg SH (2005) Nature 435:677

    Article  CAS  Google Scholar 

  53. Hajduk PJ, Olejniczak ET, Fesik SW (1997) J Am Chem Soc 119:12257

    Article  CAS  Google Scholar 

  54. Klein J, Meinecke R, Mayer M, Meyer B (1999) J Am Chem Soc 121:5336

    Article  CAS  Google Scholar 

  55. Mayer M, Meyer B (1999) Angew Chem Int Ed 38:1784

    Article  CAS  Google Scholar 

  56. Dalvit C, Pevarello P, Tato M, Veronesi M, Vulpetti A, Sundstrom M (2000) J Biomol NMR 18:65

    Article  CAS  Google Scholar 

  57. Dalvit C, Flocco M, Stockman BJ, Veronesi M (2002) Comb Chem High Throughput Screen 5:645

    Article  CAS  Google Scholar 

  58. Dalvit C, Hadden DT, Sarver RW, Ho AM, Stockman BJ (2003) Comb Chem High Throughput Screen 6:445

    Article  CAS  Google Scholar 

  59. Mayer M, Meyer B (2001) J Am Chem Soc 123:6108

    Article  CAS  Google Scholar 

  60. Meinecke R, Meyer B (2001) J Med Chem 44:3059

    Article  CAS  Google Scholar 

  61. Leone M, Freeze HH, Chan CS, Pellecchia M (2006) Curr Drug Discov Technol 3:91

    Article  CAS  Google Scholar 

  62. Becattini B, Pellecchia M (2006) Chemistry 12:2658

    Article  CAS  Google Scholar 

  63. Becattini B, Sareth S, Zhai D, Crowell KJ, Leone M, Reed JC, Pellecchia M (2004) Chem Biol 11:1107

    Article  CAS  Google Scholar 

  64. Chen J, Zhang Z, Stebbins JL, Zhang X, Hoffman R, Moore A, Pellecchia M (2007) ACS Chem Biol 2:329

    Article  CAS  Google Scholar 

  65. Becattini B, Culmsee C, Leone M, Zhai D, Zhang X, Crowell KJ, Rega MF, Landshamer S, Reed JC, Plesnila N, Pellecchia M (2006) Proc Natl Acad Sci U S A 103:12602

    Article  CAS  Google Scholar 

  66. Jahnke W, Rudisser S, Zurini M (2001) J Am Chem Soc 123:3149

    Article  CAS  Google Scholar 

  67. Jahnke W, Lawrence B, Perez L, Paris G, Strauss A, Fendrich G, Nalin CM (2000) J Am Chem Soc 122:7394

    Article  CAS  Google Scholar 

  68. Vazquez J, De SK, Chen LH, Riel-Mehan M, Emdadi A, Cellitti J, Stebbins JL, Rega MF, Pellecchia M (2008) J Med Chem 51:3460-3465

    Article  CAS  Google Scholar 

  69. Vazquez J, Tautz L, Ryan JJ, Vuori K, Mustelin T, Pellecchia M (2007) J Med Chem 50:2137

    Article  CAS  Google Scholar 

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Acknowledgments

Several review articles cover in much greater details numerous NMR applications that have been reported in the past years on the use of NMR spectroscopy in the drug discovery process and to monitor target-ligand interactions. The author apologizes if he was unable to mention properly all this work within the limited space of this article.

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Correspondence to Maurizio Pellecchia .

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Pellecchia, M. (2009). NMR Spectroscopy in Fragment Based Drug Design. In: Hayward, M.M., et al. Lead-Seeking Approaches. Topics in Medicinal Chemistry, vol 5. Springer, Berlin, Heidelberg. https://doi.org/10.1007/7355_2009_5

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