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Journal of Molecular Biology
Volume 263, Issue 5, 15 November 1996, Pages 627-636
 
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doi:10.1006/jmbi.1996.0603    How to Cite or Link Using DOI (Opens New Window)
Copyright © 1996 Academic Press Limited. All rights reserved.

Communication

Selective Methyl Group Protonation of Perdeuterated Proteins

Michael K. Rosenb, a, f1, f2, Kevin H. Gardnera, Randall C. Willisc, a, Wendy E. Parrisb, Tony Pawsonb and Lewis E. Kaya

a Protein Engineering Network Centres of Excellence and Departments of Medical Genetics, Biochemistry and Chemistry, Medical Sciences Building, University of Toronto, Toronto, Ontario M5S 1A8, Canada b Programme in Molecular Biology and Cancer, Samuel Lunenfield Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada c Biochemistry Research Division, Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada

Received 18 July 1996; 
revised 28 August 1996; 
accepted 6 September 1996. 
Available online 19 April 2002.

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Abstract

Deuteration of aliphatic sites in proteins has shown great potential to increase the range of molecules amenable to study by NMR spectroscopy. One problem inherent in high-level deuterium incorporation is the loss of1H-1H distance information obtainable from NOESY spectra of the labeled proteins. In the limit of perdeuteration, the available NH-NH NOEs are insufficient in many cases to define the three-dimensional structure of a folded protein. We describe here a method of producing proteins that retains all the advantages of perdeuteration, while enabling observation of many NOEs absent from spectra of fully deuterated samples. Overexpres sion of proteins in bacteria grown in2H2O medium containing protonated pyruvate as the sole carbon source results in complete deuteration at Cαand >80% deuteration at Cβpositions of nearly all amino acids. In contrast, the methyl groups of Ala, Val, Leu and Ile (γ2 only) remain highly protonated. This labeling pattern can be readily understood from analysis of bacterial pathways for pyruvate utilization and amino acid biosynthesis. As Ala, Val, Leu and Ile are among the most highly represented residue types in protein hydrophobic cores and at protein-protein interfaces, selectively methyl-protonated samples will be useful in many areas of structural analysis of larger molecules and molecular complexes by NMR.

Author Keywords: NMR; protein structure determination; deuteration

f1 Corresponding author

f2 Present address: M. K. Rosen, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA


Journal of Molecular Biology
Volume 263, Issue 5, 15 November 1996, Pages 627-636
 
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